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Syntax formatting of run_deseq2.r #224

Merged
merged 2 commits into from
Mar 9, 2023
Merged

Syntax formatting of run_deseq2.r #224

merged 2 commits into from
Mar 9, 2023

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DSchreyer
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the nf-core/nanoseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Mar 9, 2023

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 8f37ff5

+| ✅ 156 tests passed       |+
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: '3.0.0'
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.2
  • Run at 2023-03-09 09:14:10

@yuukiiwa yuukiiwa self-requested a review March 9, 2023 10:23
@yuukiiwa yuukiiwa changed the base branch from dev to update_3_1 March 9, 2023 10:23
yuukiiwa
yuukiiwa approved these changes Mar 9, 2023
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@yuukiiwa yuukiiwa left a comment

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Thanks, @DSchreyer! LGTM

@yuukiiwa yuukiiwa merged commit 7cd4211 into update_3_1 Mar 9, 2023
@yuukiiwa yuukiiwa deleted the DSchreyer-patch-1 branch March 10, 2023 07:37
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@yuukiiwa yuukiiwa yuukiiwa approved these changes

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@DSchreyer @yuukiiwa