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@nvnieuwk nvnieuwk released this 14 Aug 08:48
· 189 commits to main since this release
v2.0.0
7fcaf43
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Learn about vigilant mode.
  • Move repo to nf-cmgg organisation
  • Overhaul reference data handling. All data is now sourced from the igenomes config file and dynamically loaded based on the organism metadata field.
  • Drop support for bam/cram inputs
  • Update to nf-core template v2.13.1
  • Drop fgbio/fastqtosam in favour of samtools/import
  • Add samtools/coverage for coverage analysis
  • Add testing with nf-test
  • Overhaul panel coverage analysis
  • Add support for STAR aligner for RNA-seq
  • Replace CSV sampleinfo definition with validated JSON/YAML
  • Update modules
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