Elevate lineage XEC as clade 24F and KP.2.3 as clade 23G (#1152)

* Elevate lineage XEC as clade 24F This commit elevates Pango lineage XEC as clade 24F * Add 24G (KP.2.3) --------- Co-authored-by: Cornelius Roemer <[email protected]>
nextstrain · Oct 4, 2024 · 6434f5d · 6434f5d
1 parent 7db9229
commit 6434f5d
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Showing 6 changed files with 22 additions and 6 deletions.
diff --git a/defaults/clade_display_names.yml b/defaults/clade_display_names.yml
@@ -43,3 +43,5 @@
 24C: 24C (KP.3)
 24D: 24D (XDV.1)
 24E: 24E (KP.3.1.1)
+24F: 24F (XEC)
+24G: 24G (KP.2.3)
diff --git a/defaults/clade_emergence_dates.tsv b/defaults/clade_emergence_dates.tsv
@@ -44,4 +44,6 @@ Nextstrain_clade	first_sequence
 24B	2023-11-01
 24C	2023-12-01
 24D	2024-01-01
-24E	2023-12-01
+24E	2023-12-01
+24F	2024-05-01
+24G	2024-01-01
diff --git a/defaults/clade_hierarchy.tsv b/defaults/clade_hierarchy.tsv
@@ -43,3 +43,5 @@ clade	parent	WHO
 24C	24B	Omicron
 24D	21L	Omicron
 24E	24C	Omicron
+24F	24A	Omicron
+24G	24B	Omicron
diff --git a/defaults/clades.tsv b/defaults/clades.tsv
@@ -244,3 +244,16 @@ clade	gene	site	alt
 24E	nuc	13121	T
 24E	nuc	15372	T
 24E	nuc	19722	G
+
+24F	clade	24A
+24F	nuc	18657	T
+24F	nuc	19716	T
+24F	nuc	21627	A
+24F	nuc	21738	C
+24F	nuc	22928	C
+24F	nuc	23039	G
+24F	nuc	24872	T
+
+24G	clade	24B
+24G	nuc	22599	C
+24G	nuc	25593	T
diff --git a/defaults/color_ordering.tsv b/defaults/color_ordering.tsv
@@ -34043,6 +34043,8 @@ clade_membership	24B (JN.1.11.1)
 clade_membership	24C (KP.3)
 clade_membership	24D (XDV.1)
 clade_membership	24E (KP.3.1.1)
+clade_membership	24F (XEC)
+clade_membership	24G (KP.2.3)
 
 ################
 
@@ -34064,7 +34066,6 @@ emerging_lienage	GW.5
 emerging_lineage	JD.1
 emerging_lineage	XBB.1.41
 emerging_lineage	LB.1
-emerging_lineage	KP.2.3
 emerging_lineage	JN.1.50
 emerging_lineage	XDY
 

diff --git a/defaults/emerging_lineages.tsv b/defaults/emerging_lineages.tsv
@@ -328,10 +328,6 @@ LB.1	nuc	22111	T
 LB.1	nuc	22928	C
 LB.1	nuc	22599	C
 
-KP.2.3	clade	24B
-KP.2.3	nuc	22599	C
-KP.2.3	nuc	25563	T
-
 JN.1.50	clade	24A
 JN.1.50	nuc	9298	T
 JN.1.50	nuc	22309	C