ci: Move --quiet flag to accommodate snakemake=7.7.0 behavior #927
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Snakemake 7.7.0 will try to read any target following --quiet as a parameter to the argument, which is unintended here.
victorlin
changed the title
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Don't think the Snakemake issue will be resolved anytime soon, so I'm merging this to get CI working in the short-term. |
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Note: I would rather see the Snakemake issue addressed than have this PR merged.
Description of proposed changes
Snakemake 7.7.0 will try to read any target following
--quietas a parameter to the argument, which is unintended here. See failing CI run.Related issue(s)
--quietexpecting an argument is a breaking change snakemake/snakemake#1660Testing
See test runs.