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Clean up tests #703

Merged
merged 2 commits into from
Mar 19, 2021
Merged

Clean up tests #703

merged 2 commits into from
Mar 19, 2021

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huddlej
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@huddlej huddlej commented Mar 18, 2021

Deletes log files produced by functional tests of tree and removes a subpar unit test that creates an alignment FASTA file and never cleans it up. The unit test was already documented as "not a great test" and I agree that it's not necessary.

This PR also removes redundant functional tests that I added in the Zika compressed build and that only slow down testing locally and in CI.

Fixes #700
Supersedes #701

huddlej added 2 commits March 18, 2021 16:12
Most of the "compressed" Zika build does not used compressed
inputs/outputs yet, so this deletes those unnecessary tests that are
already in the main Zika build and speeds up CI by a bit.
Deletes log files produced by functional tests of tree and removes a
subpar unit test that creates an alignment FASTA file and never cleans
it up. The unit test was already documented as "not a great test" and I
agree that it's not necessary.

Fixes #700
@huddlej huddlej self-assigned this Mar 18, 2021
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codecov bot commented Mar 18, 2021

Codecov Report

Merging #703 (855bb3a) into master (684b90a) will decrease coverage by 0.08%.
The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #703      +/-   ##
==========================================
- Coverage   30.97%   30.88%   -0.09%     
==========================================
  Files          41       41              
  Lines        5644     5644              
  Branches     1364     1364              
==========================================
- Hits         1748     1743       -5     
- Misses       3823     3827       +4     
- Partials       73       74       +1     
Impacted Files Coverage Δ
augur/align.py 88.99% <0.00%> (-2.30%) ⬇️

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@huddlej huddlej merged commit e784d11 into master Mar 19, 2021
@huddlej huddlej deleted the clean-up-tests branch March 19, 2021 16:57
@huddlej huddlej added this to the Next release 11.X.X milestone Mar 19, 2021
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Running tests produces untracked files
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