Code

Make shell scripts work on Windows#437

Code

Merged

tsibley merged 5 commits intonextstrain:masternextstrain/augur:masterfrom Artoria2e5:shArtoria2e5/augur:shCopy head branch name to clipboardFeb 10, 2020

+31-18

Commits

Commits on Jan 30, 2020

• run_shell_command: Try to find bash on non-POSIX

  Artoria2e5

  committed
  5414691

• shell-quote all user-defined filenames

  Artoria2e5

  committed
  1b28739

• align: no -- for mafft

  Artoria2e5

  committed
  da5f162

Commits on Jan 31, 2020

• Check_output is for the error only

  Artoria2e5

  authored
  ef904ad

• run_shell_command: don't rely on error.filename (missing on win32)

  Artoria2e5

  authored
  6332017