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Expose KDE alignment frequencies through augur frequencies interface #271

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merged 1 commit into from
Jul 10, 2019

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huddlej
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@huddlej huddlej commented Apr 10, 2019

KDE alignment frequencies have been implemented for a while, but they have never
been exposed to the augur frequencies command line interface. This commit allows
users to specify the --method kde flag while passing multiple sequence
alignments to augur frequencies and all other flags related to KDE-based
estimation. Only auspice-formatted output is supported here.

KDE alignment frequencies have been implemented for a while, but they have never
been exposed to the augur frequencies command line interface. This commit allows
users to specify the `--method kde` flag while passing multiple sequence
alignments to augur frequencies and all other flags related to KDE-based
estimation. Only auspice-formatted output is supported here.
@rneher rneher merged commit 4b71464 into master Jul 10, 2019
@rneher rneher deleted the kde-alignment-frequency-interface branch July 10, 2019 12:53
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2 participants