Merge pull request #544 from cwoszczak/fix-trait-output

fix mugration models output directory
nextstrain · May 23, 2020 · 968d157 · 968d157
2 parents acd0cd5 + 85b12a9
commit 968d157
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/augur/traits.py b/augur/traits.py
@@ -160,7 +160,7 @@ def run(args):
 
     mugration_states = defaultdict(dict)
     models = defaultdict(dict)
-    out_prefix = '.'.join(args.tree.split('.')[:-1])
+    out_prefix = '.'.join(args.output_node_data.split('.')[:-1])
 
     from treetime import version as treetime_version
     print(f"augur traits is using TreeTime version {treetime_version}")