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Link to other docs on the failOnIgnore option #5122

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merged 5 commits into from
Jul 10, 2024
Merged

Link to other docs on the failOnIgnore option #5122

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7807be0
Link to other docs on the failOnIgnore option
jfy133 Jul 8, 2024
5b9f4db
Link back failOnIgnore to usage with errorStratgy
jfy133 Jul 8, 2024
a9128a9
Fix cross-apge links
jfy133 Jul 8, 2024
c776288
Merge branch 'master' into improve-failonignore
jfy133 Jul 8, 2024
a09a269
Merge branch 'master' into improve-failonignore
jfy133 Jul 10, 2024
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2 changes: 2 additions & 0 deletions docs/metadata.md
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Expand Up @@ -63,6 +63,8 @@ The following table lists the properties that can be accessed on the `workflow`
:::
: Whether the `workflow.failOnIgnore` config option was enabled.

: See {ref}`process-error-strategy` for use-cases of this option.

`workflow.fusion.enabled`
: Whether Fusion is enabled.

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2 changes: 2 additions & 0 deletions docs/process.md
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Expand Up @@ -1691,6 +1691,8 @@ To illustrate the differences between error strategies, consider the following e
- **errorStrategy `finish`**: Nextflow will allow any other existing tasks to conclude (but not submit any more) and report an error.
- **errorStrategy `ignore`**: Nextflow will continue submitting tasks for the remaining 95 samples, complete the workflow, and report a successful pipeline completion.
- **errorStrategy `ignore` and `workflow.failOnIgnore` set to `true` in configuration**: The same behavior as setting the errorStrategy alone, except the pipeline will return an exit status of -1 and report an error.

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See {ref}`metadata-workflow` for more information on `workflow.failOnIgnore`.
:::

The `retry` error strategy allows you to re-submit for execution a process returning an error condition. For example:
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