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Description
Use the Radon transform to measure spinal cord morphometry.
Brief context
Currently, sct_process_segmentation
uses skimage.regionprops
's elliptical approximation to measure AP and RL diameters. This approach has limitations in pathologies, e.g., when the spinal cord is compressed and rotated -- for example, the ellipse might not capture the shape of the compressed cord.
The idea is to apply the Radon transform (used in CT imaging) slice-wise along the SI direction on the spinal cord segmentation to get the angle we could rotate the spinal cord segmentation by.

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Some relevant issues and discussions
spinalcordtoolbox/spinalcordtoolbox#4939
spinalcordtoolbox/spinalcordtoolbox#4958
spinalcordtoolbox/spinalcordtoolbox#4943
spinalcordtoolbox/spinalcordtoolbox#4282
jcohenadad and sandrinebedard