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docker docs
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ncherric committed Aug 25, 2023
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Expand Up @@ -95,13 +95,16 @@ Here is a link for token_ information and creation_.

.. code-block:: console
$ cd ../../
$ cd External_SSD
$ ls
$ cd <NAME-OF-EXTERNAL-DRIVE> # Mine happens to be Tyche, thus, cd Tyche
$ git clone https://github.com/ncherric/Iliad.git
$ cd Iliad
Now, there should be an ``./Iliad`` directory cloned into your ``/path/to/project/`` like such ``/path/to/project/Iliad/``.
And your current working directory should be ``/path/to/project/Iliad/``.
And your current working directory should be ``/path/to/project/Iliad/``. Mine happens to be ``/External_SSD/Tyche/Iliad/``.

Two important folders found in the Iliad directory are **workflow** and **config**.
The ``workflow`` contains rules and scripts that a designated Snakefile in Iliad call on to run a specific module.
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