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Update README.md

Update README.md #76

Workflow file for this run

name: Tests
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
formatting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v1
- name: Checkout submodules
uses: textbook/[email protected]
- name: Formatting
uses: github/[email protected]
env:
VALIDATE_ALL_CODEBASE: false
DEFAULT_BRANCH: main
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
VALIDATE_SNAKEMAKE_SNAKEFMT: true
linting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v1
- name: Checkout submodules
uses: textbook/[email protected]
- name: Linting
uses: snakemake/[email protected]
with:
directory: '.test'
snakefile: workflow/Snakefile
args: '--lint'
run-workflow:
runs-on: ubuntu-latest
needs:
- formatting
- linting
steps:
- uses: actions/checkout@v1
- name: Checkout submodules
uses: textbook/[email protected]
- name: snakemake
uses: snakemake/[email protected]
with:
directory: .test
snakefile: workflow/Snakefile
args: "--use-conda --show-failed-logs --cores 1 --conda-cleanup-pkgs cache"