installation docs #38

	name: Tests

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	formatting:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v1
	- name: Checkout submodules
	uses: textbook/[email protected]
	- name: Formatting
	uses: github/[email protected]
	env:
	VALIDATE_ALL_CODEBASE: false
	DEFAULT_BRANCH: main
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	VALIDATE_SNAKEMAKE_SNAKEFMT: true

	linting:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v1
	- name: Checkout submodules
	uses: textbook/[email protected]
	- name: Linting
	uses: snakemake/[email protected]
	with:
	directory: '.test'
	snakefile: workflow/Snakefile
	args: '--lint'

	run-workflow:
	runs-on: ubuntu-latest
	needs:
	- formatting
	- linting
	steps:
	- uses: actions/checkout@v1
	- name: Checkout submodules
	uses: textbook/[email protected]

	- name: snakemake
	uses: snakemake/[email protected]
	with:
	directory: .test
	snakefile: workflow/Snakefile
	args: "--use-conda --show-failed-logs --cores 1 --conda-cleanup-pkgs cache"

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