Campy species listed (#4) #9
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| # make a workflow called check-dbs | |
| name: check-dbs | |
| on: [push] | |
| jobs: | |
| check-dbs: | |
| strategy: | |
| matrix: | |
| db: [CAMPY, CBOT, CRONO, LISTERIA, SALM, STEC, VIBR] | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Check mandatory files | |
| run: | | |
| set -x | |
| ls db/${{ matrix.db }}/alleles_0.* | |
| ls db/${{ matrix.db }}/alleleinfo.txt_0 | |
| ls db/${{ matrix.db }}/loci.tsv | |
| ls db/${{ matrix.db }}/OrganismSettings.json | |
| - name: Check optional files | |
| run: | | |
| set -x | |
| ls db/${{ matrix.db }}/alleles.fasta.gz || true | |
| ls -a db/${{ matrix.db }}/loci || true | |