Skip to content

Issues: ncbi/datasets

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

23 Open 203 Closed
23 Open 203 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Datasets download files are incomplete！ bug Something isn't working
#460 opened Mar 13, 2025 by 123xiaochen
Virus genome download problem bug Something isn't working
#459 opened Mar 12, 2025 by ericcox1
1
A question on the flag '--inputfile' in the command 'datasets summary genome taxon' : taxid with no genome enhancement New feature or request
#450 opened Feb 9, 2025 by DongHRLZU
2
Datasets not working from one of our servers: getting timeouts connecting to api.ncbi.nlm.nih.gov bug Something isn't working
#449 opened Feb 6, 2025 by corneliusroemer
11
Incorrect error message raised when underlying error is different Error: <Numer> appears to be an invalid tax name. This could be due to unexpected special characters. bug Something isn't working
#448 opened Feb 5, 2025 by corneliusroemer
9
Very slow download of dehydrated .zip file
#446 opened Feb 4, 2025 by Jtrachsel
6
found incorrect/missing assembly_link_type bug Something isn't working
#436 opened Dec 10, 2024 by Smeds
1
Support for non-Refseq genes enhancement New feature or request
#434 opened Dec 6, 2024 by pentamorfico
1
Include corresponding gca/gcf accession in the metadata of each sample enhancement New feature or request
#433 opened Dec 5, 2024 by anna-parker
1
"Total" sequence length doesn't include organelles bug Something isn't working
#403 opened Sep 17, 2024 by muffato
2 tasks done
1
Querying by gene_id in /genome/accession/{accession}/annotation_report enhancement New feature or request
#398 opened Sep 4, 2024 by manulera
"/note" feature retrieving through command lines enhancement New feature or request
#389 opened Jul 31, 2024 by GabrielFalque
4
How to download genome annotation report enhancement New feature or request
#379 opened Jun 20, 2024 by gunjanpandey
1
Add an --include all option to datasets download genome enhancement New feature or request
#375 opened Jun 10, 2024 by dtdoering
2
Download error for list of WP accessions
#372 opened Jun 3, 2024 by ericcox1
11
Add publication info to assembly or BioProject fields. enhancement New feature or request
#369 opened May 24, 2024 by conchoecia
2
Submitter Names lack spaces in dataformat tsv virus-genome compared to genbank file serialization bug Something isn't working
#336 opened Mar 21, 2024 by corneliusroemer
1
Truncated FNAs on non-dehydrated downloads of large datasets, please make it more clear that non-dehydrated downloads are dangerous checksum
#331 opened Mar 14, 2024 by joeweaver
1
--geo-location flag runs into invalid zip archive error bug Something isn't working
#326 opened Feb 28, 2024 by joverlee521
6
404 on annotation_report when assembly has no annotations
#321 opened Feb 23, 2024 by manulera
2
Not all parameters of the taxonomy API work
#295 opened Dec 6, 2023 by alvanuffelen
@syntheticgio
3
Unexpected EOF Errors During Actinopterygii Genomes Download in RefSeq bug Something isn't working
#294 opened Dec 3, 2023 by mkrg01
16
correct headers for tab-delimited output
#290 opened Nov 28, 2023 by jvolkening
1
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.