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cjw85 committed Oct 23, 2023
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16 changes: 15 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -4,9 +4,23 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [unreleased]
## [v1.11.0]
### Fixed
- Correct suffix of consensus file when `medaka_consensus` outputs a fastq.
### Added
- Choice of model file can be introspected from input files. For BAM files the
read group (RG) headers are searched according to the dorado
[specification](https://github.com/nanoporetech/dorado/blob/master/documentation/SAM.md),
whilst for .fastq files the comment section of a number of reads are checked
for corresponding read group information. In the latter case see README for
information on correctly converting basecaller output to .fastq whilst
maintaining the relevant meta information.
- `medaka tools resolve_model` can display the model that would automatically
be used for a given input file.
### Changed
- If no model is provided on command-line interface (medaka consensus,
medaka_consensus, and medaka_haploid_variant) automatic attempts will be made
to choose the appropriate model.

## [v1.10.0]
### Changed
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2 changes: 1 addition & 1 deletion medaka/__init__.py
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Expand Up @@ -5,7 +5,7 @@
import subprocess
import sys

__version__ = "1.10.0"
__version__ = "1.11.0"

try:
import pyabpoa as abpoa
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