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fix for the the 1000 R$ bai problem
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@abhi18av
abhi18av committed Apr 22, 2022
1 parent 1760d15 commit 4661670
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion modules/mtbseq/tbbwa.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ process TBBWA {

output:
path("Bam/${genomeFileName}_${params.library_name}*.{bam,bai,bamlog}")
tuple val(genomeFileName), path("Bam/${genomeFileName}_${params.library_name}*.bam"), emit: bam_tuple
tuple val(genomeFileName), path("Bam/${genomeFileName}_${params.library_name}*.{bam,bai}"), emit: bam_tuple
path("Bam/${genomeFileName}_${params.library_name}*.bam"), emit: bam

script:
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@Mxrcon
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@Mxrcon Mxrcon commented on 4661670 Apr 22, 2022

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This error was found by @abhi18av after inspecting the .command.run on the cluster after a tbpile fail

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