Skip to content

loinc documentation and relation to cdisc #6

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 3 commits into from
Jan 31, 2023
Merged

loinc documentation and relation to cdisc #6

Show file tree
Hide file tree
Changes from 1 commit
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
26bd88a
loinc documentation and relation to cdisc
apatruno618 Jan 27, 2023
83677c4
Update lab-result.md
jozcar1 Jan 31, 2023
0142f35
Update vital-sign.md
jozcar1 Jan 31, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
7 changes: 5 additions & 2 deletions docs/resources/lab-result.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,9 @@
Laboratory data are mapped to FHIR's [Observation](http://hl7.org/fhir/StructureDefinition/Observation){:target="blank"} resource. Laboratory data are obtained via HL7 message from MSK's Laboratory Information System (LIS). Data are mapped to a trial visit and pushed into the Clinical Research Data Warehouse.
Laboratory data are mapped to FHIR's [Observation](http://hl7.org/fhir/2021Mar/observation.html){:target="blank"} resource. Data are ingested into the Clinical Research Data Warehouse via HL7 message from MSK's Laboratory Information System (LIS) and mapped to a trial visit by clinical research staff.

> **_NOTE:_** If available in the source data, a LOINC code is mapped to `code.coding.code`, otherwise the `code.coding.code` does not appear in the response. Please refer to the protocol specific Data Transfer Specification for a list of test names and LOINC codes relevant to your study.

For guidance on mapping [LOINC](https://www.cdisc.org/kb/articles/loinc-and-sdtm) codes to [CDISC](https://datascience.cancer.gov/resources/cancer-vocabulary/cdisc-terminology) or for additional test information, such as the analyte measured or specimen type upon which the observation was made, check out [LOINC's FHIR terminology service](https://loinc.org/fhir/).

> **_NOTE:_** If available in the source data, a LOINC code is mapped to `code.coding.code`, otherwise the `code.coding.code` does not appear in the response. Please refer to the protocol specific Data Transfer Specification for more information.

## Request
```
Expand Down
2 changes: 1 addition & 1 deletion docs/resources/vital-sign.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@

Vital signs data are mapped to FHIR's [Observation](http://hl7.org/fhir/StructureDefinition/Observation){:target="blank"} resource. Each record is mapped to a trial visit and pushed into the Clinical Research Data Warehouse.
Vital signs data are mapped to FHIR's [Observation](http://hl7.org/fhir/2021Mar/observation.html){:target="blank"} resource. Each record is mapped to a trial visit and pushed into the Clinical Research Data Warehouse.


## Request
Expand Down