Candidate for dev/master 2017-08-17#579

Merged

adcroft merged 183 commits into

candidate-dev-master-2017-08-17

Aug 22, 2017

Commits on Jul 19, 2016

Add to generate Neverland using the benchmark source. We change thickness, topography and ts.. stuffs.
sinakhani
committed
Add Neverland topography to the Neverland initialization
sinakhani
committed

Commits on Jul 21, 2016

Commits on Aug 22, 2016

Adjust the Neverland wind stress near the Antarctica to fix some undesirable behavior.
sinakhani
committed

Commits on May 17, 2017

Neutral positions by discontinuous PPM
Andrew Shao
committed

Commits on May 18, 2017

Additional changes to make sure that code compiles. Development of the
Andrew Shao
committed

Commits on Jun 20, 2017

Merge branch 'dev/master' of https://github.com/NOAA-GFDL/MOM6 into ndiff_update_neutral_position
Andrew Shao
committed

Commits on Jun 22, 2017

Bracketing fix for transform test. Changes answers. Closes #531
Nicholas Hannah
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Some initial changes for the neutral surface positions found using a discontinuous reconstruction
Andrew Shao
committed

Commits on Jun 23, 2017

Discontinuous T/S reconstruction still does not work correctly because
Andrew Shao
committed

Commits on Jun 26, 2017

Code fix to remove 2nd call to extractfluxes1d when using ePBL.
Brandon Reichl
committed
Adding code changes that are part of previous commit.
Brandon Reichl
committed

Commits on Jun 28, 2017

Make changes based on python prototyping of the discontinuous version of
Andrew Shao
committed
Fixed which pressure array is supposed to be used
Andrew Shao
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Commits on Jun 29, 2017

Discontinuous reconstruction of neutral diffusion is working better, but
Andrew Shao
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Commits on Jul 3, 2017

Remove apostrophe from comments in MOM_forcing_type.F90
Brandon Reichl
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Merge branch 'user/bgr/BuoyFluxFix' into user/bgr/Fix_BuoyFlux_merged
Brandon Reichl
committed

Commits on Jul 6, 2017

Corrected the chksum scaling for pbce
Hallberg-NOAA
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Added chksum calls for h_u and h_v in btcalc
Hallberg-NOAA
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(*)Convert GV%Angstrom to units of H
Hallberg-NOAA
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Added Doxygen Comments

Caroline Cardinale
authored and
Caroline Cardinale
committed
Merge branch 'dev/gfdl' into user/bgr/Fix_BuoyFlux_merged
Brandon Reichl
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Add missing comment to MOM_forcing_type.F90
Brandon Reichl
committed

Commits on Jul 7, 2017

Commits on Jul 11, 2017

Updated the discontinuous reconstruction, but not working as expected, so
Andrew Shao
committed

Commits on Jul 12, 2017

Added Doxygen Comments

Caroline Cardinale
authored and
Caroline Cardinale
committed

Commits on Jul 13, 2017

Try to reduce RTD memory usage
adcroft
committed
Turned off gen-HTML and listings
adcroft
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Return to orig w/o HTML
adcroft
committed
Removed program listing
adcroft
committed
Newer algorithm works away from top and bottom boundaries
Andrew Shao
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Fixed conflict with upstream
Andrew Shao
committed
Neutral surface discontinuous reconstuction with no boundary extrap
Andrew Shao
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Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6 into ndiff_update_neutral_position
Andrew Shao
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Change module name variable from mod to mdl
Andrew Shao
committed

Commits on Jul 14, 2017

Commits on Jul 17, 2017

Commits on Jul 18, 2017

Commits on Jul 19, 2017

Commits on Jul 22, 2017

Included new functions to calculate the second derivatives of density from
Andrew Shao
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Begin to add a rootfinder to solve for the position of a nuetral surface
Andrew Shao
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Add scalar version of routines for higher order density derivatives
Andrew Shao
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Finished at least the original code for the refinement of neutral position.
Andrew Shao
committed

Commits on Jul 23, 2017

Add an extractor routine for the remapping control structure
Andrew Shao
committed
Refinement of neutral surface position routine is ready to be tested
Andrew Shao
committed

Commits on Jul 24, 2017

Merge remote-tracking branch 'gfdl/dev/gfdl' into user/ksh/open_bc
kshedstrom
committed

Commits on Jul 26, 2017

Commits on Jul 27, 2017

Commits on Jul 28, 2017

Commits on Jul 31, 2017

+More OBC stuff.
kshedstrom
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Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6 into dev/gfdl

Caroline Cardinale
authored and
Caroline Cardinale
committed
Merge remote-tracking branch 'gfdl/dev/gfdl' into user/ksh/open_bc
kshedstrom
committed
(*)Merge branch 'Hallberg-NOAA-dev/gfdl' into dev/gfdl
adcroft
committed
Update MOM_EOS and MOM_EOS_Wright to include calculation of second
Andrew Shao
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Update neutral diffusion with the following:
Andrew Shao
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Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6 into dev/gfdl

Caroline Cardinale
authored and
Caroline Cardinale
committed
Fixed some bugs in refine_nondim_position
Andrew Shao
committed

Commits on Aug 1, 2017

Merge pull request #565 from CarolineCardinale/dev/gfdl
adcroft
authored

Commits on Aug 2, 2017

Merge branch 'neverland-rebuild' into import-neverland
adcroft
committed

Commits on Aug 3, 2017

Realized that same_direction should be false if reached_bottom is true.
Andrew Shao
committed
Write unit tests for refine_nondim_position. Next up is the discontinuous
Andrew Shao
committed

Commits on Aug 4, 2017

Commits on Aug 7, 2017

Commits on Aug 8, 2017

Allow runtime option for verbose output in neutral diffusion
Andrew Shao
committed

Commits on Aug 9, 2017

Commits on Aug 10, 2017

Commits on Aug 11, 2017

Commits on Aug 15, 2017

Commits on Aug 16, 2017

Commits on Aug 22, 2017

Patch for candidate-dev-master-2017-08-17
adcroft
committed