GFDL to main candidate branch (2022-05-16)#1569

Closed

marshallward wants to merge 195 commits into

mom-ocean:mainfrom

NOAA-GFDL:dev/gfdl

Commits on Jan 28, 2022

additions for stochastic physics and ePBL perts

Philip Pegion
authored and
kshedstrom
committed
cleanup of code and enhancement of ePBL perts

pjpegion
authored and
kshedstrom
committed
Update MOM_diabatic_driver.F90

pjpegion
authored and
kshedstrom
committed
Update MOM_diabatic_driver.F90

pjpegion
authored and
kshedstrom
committed
Update MOM_diabatic_driver.F90

pjpegion
authored and
kshedstrom
committed
add stochy_restart writing to mom_cap

pjpegion
authored and
kshedstrom
committed
additions for stochy restarts

pjpegion
authored and
kshedstrom
committed
clean up debug statements

pjpegion
authored and
kshedstrom
committed
clean up code

pjpegion
authored and
kshedstrom
committed
fix non stochastic ePBL calculation

pjpegion
authored and
kshedstrom
committed
re-write of stochastic code to remove CPP directives

pjpegion
authored and
kshedstrom
committed
clean up MOM_domains

pjpegion
authored and
kshedstrom
committed
make stochastics optional

pjpegion
authored and
kshedstrom
committed
correct coupled_driver/ocean_model_MOM.F90 and other cleanup

pjpegion
authored and
kshedstrom
committed
clean up of code for MOM6 coding standards

pjpegion
authored and
kshedstrom
committed
remove stochastics container

pjpegion
authored and
kshedstrom
committed
revert MOM_domains.F90

pjpegion
authored and
kshedstrom
committed
clean up of mom_ocean_model_nuopc.F90

pjpegion
authored and
kshedstrom
committed
remove PE_here from mom_ocean_model_nuopc.F90

pjpegion
authored and
kshedstrom
committed
remove debug statements

pjpegion
authored and
kshedstrom
committed
stochastic physics re-write

pjpegion
authored and
kshedstrom
committed
move stochastics to external directory

pjpegion
authored and
kshedstrom
committed
doxygen cleanup

pjpegion
authored and
kshedstrom
committed
add write_stoch_restart_ocn to MOM_stochastics

pjpegion
authored and
kshedstrom
committed
add logic to remove incrments from restart if outside IAU window

pjpegion
authored and
kshedstrom
committed
revert logic wrt increments

pjpegion
authored and
kshedstrom
committed
add comments

pjpegion
authored and
kshedstrom
committed
update to gfdl 20210806 (#74)

authored and
kshedstrom
committed
Several little things, one is making sponge less verbose.
kshedstrom
committed
return a more accurate error message in MOM_stochasics

pjpegion
authored and
kshedstrom
committed
Working on boundary layer docs.
kshedstrom
committed
Done with EPBL docs?
kshedstrom
committed
Undoing some patches from others
kshedstrom
committed
Adding in that SAL commit again.
kshedstrom
committed
correction on type in directory name

jiandewang
authored and
kshedstrom
committed
Oops, more cleanup.
kshedstrom
committed

Commits on Feb 15, 2022

+Add MOM_check_scaling.F90 and MOM_scaling_check.F90

Hallberg-NOAA
authored and
marshallward
committed
+Move MOM_scaling_check.F90 to MOM_unique_scales.F90

Hallberg-NOAA
authored and
marshallward
committed

Commits on Feb 16, 2022

(*)Correct memory declarations in MOM_regridding

Hallberg-NOAA
authored and
marshallward
committed

Commits on Feb 17, 2022

Add optional argument to FMS2 version of get_field_size

MJHarrison-GFDL
authored and
marshallward
committed
remove unnecessary optional flag

MJHarrison-GFDL
authored and
marshallward
committed

Commits on Feb 18, 2022

Merge branch 'main' into main_to_dev
marshallward
committed

Commits on Feb 20, 2022

Commits on Feb 21, 2022

Merge pull request #71 from NOAA-GFDL/main_to_dev
Hallberg-NOAA
authored

Commits on Feb 26, 2022

Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg
kshedstrom
committed
Report mean temperature from MOM_state_stats()

Hallberg-NOAA
authored and
marshallward
committed
+Add global_mass_int_EFP

Hallberg-NOAA
authored and
marshallward
committed
Use global_mass_integral in lateral_bdry_diff

Hallberg-NOAA
authored and
marshallward
committed
(*)+Reproducing tracer stocks

Hallberg-NOAA
authored and
marshallward
committed
(*)+Use reproducing stocks for all tracer packages

Hallberg-NOAA
authored and
marshallward
committed
Removed trailing white space

Hallberg-NOAA
authored and
marshallward
committed

Commits on Feb 27, 2022

Commits on Feb 28, 2022

Commits on Mar 5, 2022

+Add ALE options mimicking Hycom

Hallberg-NOAA
authored and
marshallward
committed

Commits on Mar 7, 2022

Commits on Mar 9, 2022

bugfix: static h_new shape remaining_transport_sum
marshallward
committed

Commits on Mar 10, 2022

Commits on Mar 12, 2022

+Stop logging NEW_SPONGES
Hallberg-NOAA
committed

Commits on Mar 14, 2022

Commits on Mar 15, 2022

+Add Laplacian diffusion of interface heights

Hallberg-NOAA
authored and
marshallward
committed

Commits on Mar 16, 2022

Avoid copying the tracer registry in advect_tracer

Hallberg-NOAA
authored and
marshallward
committed
(*)Fix rescaling in RGC_initialize_sponges

Hallberg-NOAA
authored and
marshallward
committed
Corrected the license on RGC_initialization.F90

Hallberg-NOAA
authored and
marshallward
committed

Commits on Mar 17, 2022

Commits on Mar 21, 2022

Commits on Mar 22, 2022

Commits on Mar 23, 2022

reworked algebra corner spread, rotation parenthesis (#90)

raphaeldussin
and
Raphael Dussin
authored

Commits on Mar 28, 2022

+Better multi-line parameter specification handling

Hallberg-NOAA
authored and
marshallward
committed
Support arbitrarily long parameter spec lines

Hallberg-NOAA
authored and
marshallward
committed
Reduce the populate_param_data memory footprint

Hallberg-NOAA
authored and
marshallward
committed
Set INPUT_STR_LENGTH to 1024

Hallberg-NOAA
authored and
marshallward
committed
Error handler support

marshallward
authored and
adcroft
committed
Merge branch 'dev/gfdl' into unscale_restarts
Hallberg-NOAA
committed

Commits on Mar 30, 2022

Merge pull request #94 from Hallberg-NOAA/unscale_restarts
marshallward
authored

Commits on Mar 31, 2022

add residual loss term for internal tides (#95)

authored

Commits on Apr 1, 2022

+Refactor writing the vertical_coordinate file

Hallberg-NOAA
authored and
marshallward
committed

Commits on Apr 2, 2022

+Add optional conversion argument to register_diag_scalar

Hallberg-NOAA
authored and
marshallward
committed
Convert global_area_mean diagnostics when writing

Hallberg-NOAA
authored and
marshallward
committed
Simplify diagnostics using global_area_integral

Hallberg-NOAA
authored and
marshallward
committed
Rescale new_depth in apply_topography_edits_from_file

Hallberg-NOAA
authored and
marshallward
committed
MOM_internal_tides diagnostic code simplification

Hallberg-NOAA
authored and
marshallward
committed
+Avoid nonsensical units descriptions

Hallberg-NOAA
authored and
marshallward
committed
Minor get_param call reformatting

Hallberg-NOAA
authored and
marshallward
committed
MOM_neutral_diffusion code cleanup

Hallberg-NOAA
authored and
marshallward
committed
+Corrected units in dumbbell get_param calls

Hallberg-NOAA
authored and
marshallward
committed

Commits on Apr 4, 2022

Add missing h_neglect (#98)

NoraLoose
and
Hallberg-NOAA
authored

Commits on Apr 6, 2022

additions for stochastic physics and ePBL perts

Philip Pegion
authored and
kshedstrom
committed
cleanup of code and enhancement of ePBL perts

pjpegion
authored and
kshedstrom
committed
Update MOM_diabatic_driver.F90

pjpegion
authored and
kshedstrom
committed
Update MOM_diabatic_driver.F90

pjpegion
authored and
kshedstrom
committed
Update MOM_diabatic_driver.F90

pjpegion
authored and
kshedstrom
committed
add stochy_restart writing to mom_cap

pjpegion
authored and
kshedstrom
committed
additions for stochy restarts

pjpegion
authored and
kshedstrom
committed
clean up debug statements

pjpegion
authored and
kshedstrom
committed
clean up code

pjpegion
authored and
kshedstrom
committed
fix non stochastic ePBL calculation

pjpegion
authored and
kshedstrom
committed
re-write of stochastic code to remove CPP directives

pjpegion
authored and
kshedstrom
committed
clean up MOM_domains

pjpegion
authored and
kshedstrom
committed
make stochastics optional

pjpegion
authored and
kshedstrom
committed
correct coupled_driver/ocean_model_MOM.F90 and other cleanup

pjpegion
authored and
kshedstrom
committed
clean up of code for MOM6 coding standards

pjpegion
authored and
kshedstrom
committed
remove stochastics container

pjpegion
authored and
kshedstrom
committed
revert MOM_domains.F90

pjpegion
authored and
kshedstrom
committed
clean up of mom_ocean_model_nuopc.F90

pjpegion
authored and
kshedstrom
committed
remove PE_here from mom_ocean_model_nuopc.F90

pjpegion
authored and
kshedstrom
committed
remove debug statements

pjpegion
authored and
kshedstrom
committed
stochastic physics re-write

pjpegion
authored and
kshedstrom
committed
move stochastics to external directory

pjpegion
authored and
kshedstrom
committed
doxygen cleanup

pjpegion
authored and
kshedstrom
committed
add write_stoch_restart_ocn to MOM_stochastics

pjpegion
authored and
kshedstrom
committed
add logic to remove incrments from restart if outside IAU window

pjpegion
authored and
kshedstrom
committed
revert logic wrt increments

pjpegion
authored and
kshedstrom
committed
add comments

pjpegion
authored and
kshedstrom
committed
update to gfdl 20210806 (#74)

authored and
kshedstrom
committed
Several little things, one is making sponge less verbose.
kshedstrom
committed
return a more accurate error message in MOM_stochasics

pjpegion
authored and
kshedstrom
committed
Working on boundary layer docs.
kshedstrom
committed
Done with EPBL docs?
kshedstrom
committed
Undoing some patches from others
kshedstrom
committed
Adding in that SAL commit again.
kshedstrom
committed
correction on type in directory name

jiandewang
authored and
kshedstrom
committed
Oops, more cleanup.
kshedstrom
committed
Part of the fix for issue #54.
kshedstrom
committed
More fixes for issue #54.
kshedstrom
committed
Fix to Z_RESCALE bug in ePBL.
kshedstrom
committed
Fix the rebase
kshedstrom
committed
Rest of fix for issue #54.
kshedstrom
committed
Merge branch 'dev/esmg' of github.com:ESMG/MOM6 into dev/esmg
kshedstrom
committed

Commits on Apr 8, 2022

Commits on Apr 9, 2022

+Add Hybgen regridding

Hallberg-NOAA
authored and
marshallward
committed
+Convective adjustment outside regridding_main

Hallberg-NOAA
authored and
marshallward
committed

Commits on Apr 11, 2022

Standardized syntax in mask2d logical tests

Hallberg-NOAA
authored and
marshallward
committed

Commits on Apr 12, 2022

+Document or eliminate undocumented interfaces

Hallberg-NOAA
authored and
marshallward
committed
Removal of non-standard extensions
marshallward
committed
+Remove append_substring

Hallberg-NOAA
authored and
marshallward
committed

Commits on Apr 14, 2022

Commits on Apr 16, 2022

FMS2: get_field_sizes with FMS1 emulation
marshallward
committed

Commits on Apr 19, 2022

Commits on Apr 20, 2022

Commits on Apr 21, 2022

Commits on Apr 22, 2022

Merge pull request #117 from Hallberg-NOAA/Bering_domain_rescaling_fix
Hallberg-NOAA
authored

Commits on May 3, 2022

Candidate branch main->dev/gfdl
marshallward
committed

Commits on May 4, 2022

Merge pull request #120 from NOAA-GFDL/main_to_dev
adcroft
authored

Commits on May 8, 2022

+Revised stochastics code for style compliance

Hallberg-NOAA
authored and
marshallward
committed
+Style compliance in external/drifters code

Hallberg-NOAA
authored and
marshallward
committed
Style compliance in external/ODA_hooks code

Hallberg-NOAA
authored and
marshallward
committed

Commits on May 9, 2022

Impose standard indentation in most driver code

Hallberg-NOAA
authored and
marshallward
committed
Impose standard indentation in nuopc_cap code

Hallberg-NOAA
authored and
marshallward
committed

Commits on May 10, 2022

+(*)Fix a scaling bug in MOM_horizontal_regridding

Hallberg-NOAA
authored and
marshallward
committed

Commits on May 11, 2022

Merge branch 'dev/gfdl' into EOS_interface_cleanup
Hallberg-NOAA
committed

Commits on May 19, 2022

Merge pull request #118 from Hallberg-NOAA/EOS_interface_cleanup
marshallward
authored