-
-
Notifications
You must be signed in to change notification settings - Fork 1.4k
FIX: Handle an Eyelink File with blank lines injected throughout file #13469
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Merged
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This new test replicates the issue described at https://mne.discourse.group/t/issues-in-loading-and-visualising-the-calibration-data-in-eyelink-asc-files/11510 Where there are blank lines between each data line in a calibration
Member
|
Test failing successfully -- true TDD! |
Contributor
Author
Should be fixed Now 🙂 🤞 |
larsoner
approved these changes
Oct 29, 2025
Member
larsoner
left a comment
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Looks good, thanks @scott-huberty !
larsoner
added a commit
to BeiGeJin/mne-python
that referenced
this pull request
Nov 5, 2025
* upstream/main: (230 commits) FIX: Fix ICA.apply when fitted including marked bad channels (mne-tools#13478) FIX: Correctly set the calibration factor in Nihon Kohden reader (mne-tools#13468) [pre-commit.ci] pre-commit autoupdate (mne-tools#13479) MAINT: Update code credit (mne-tools#13477) Fix `versionadded` directive formatting (mne-tools#13471) typo in mailmap (mne-tools#13475) FIX: Fix _plot_topomap channel names plotting when using a mask (mne-tools#13470) FIX: Handle an Eyelink File with blank lines injected throughout file (mne-tools#13469) ENH: adds annotation filtering to raw and ica source figures (mne-tools#13460) MAINT: Restore VTK nightly wheel on Linux and bump changelog checker (mne-tools#13436) [pre-commit.ci] pre-commit autoupdate (mne-tools#13465) FIX: Fix add_reference_channels for passing two channels names (mne-tools#13466) ENH: Add on_missing for combine_channels (mne-tools#13463) Bump the actions group with 2 updates (mne-tools#13464) Move development dependencies into a dependency group (no more extra) (mne-tools#13452) ENH: add on_missing for rename_channels (mne-tools#13456) add advisory board to website (mne-tools#13462) ENH: Support Nihon Kohden EEG-1200A V01.00 (mne-tools#13448) MAINT: Update dependency specifiers (mne-tools#13459) ENH: Add encoding parameter to Nihon Kohden reader (mne-tools#13458) ...
larsoner
added a commit
to szz-dvl/mne-python
that referenced
this pull request
Nov 5, 2025
* upstream/main: (85 commits) FIX: Fix ICA.apply when fitted including marked bad channels (mne-tools#13478) FIX: Correctly set the calibration factor in Nihon Kohden reader (mne-tools#13468) [pre-commit.ci] pre-commit autoupdate (mne-tools#13479) MAINT: Update code credit (mne-tools#13477) Fix `versionadded` directive formatting (mne-tools#13471) typo in mailmap (mne-tools#13475) FIX: Fix _plot_topomap channel names plotting when using a mask (mne-tools#13470) FIX: Handle an Eyelink File with blank lines injected throughout file (mne-tools#13469) ENH: adds annotation filtering to raw and ica source figures (mne-tools#13460) MAINT: Restore VTK nightly wheel on Linux and bump changelog checker (mne-tools#13436) [pre-commit.ci] pre-commit autoupdate (mne-tools#13465) FIX: Fix add_reference_channels for passing two channels names (mne-tools#13466) ENH: Add on_missing for combine_channels (mne-tools#13463) Bump the actions group with 2 updates (mne-tools#13464) Move development dependencies into a dependency group (no more extra) (mne-tools#13452) ENH: add on_missing for rename_channels (mne-tools#13456) add advisory board to website (mne-tools#13462) ENH: Support Nihon Kohden EEG-1200A V01.00 (mne-tools#13448) MAINT: Update dependency specifiers (mne-tools#13459) ENH: Add encoding parameter to Nihon Kohden reader (mne-tools#13458) ...
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This new test replicates the issue described at https://mne.discourse.group/t/issues-in-loading-and-visualising-the-calibration-data-in-eyelink-asc-files/11510
Where there are blank lines between each data line in a calibration. i.e. Most files should look like this:
But the users looks like this:
Next I'll need to fix it.