ENH: Improve make_head_surface options#10592
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larsoner merged 18 commits intomne-tools:mainfrom May 10, 2022
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* upstream/main: MRG: Add "highlight" parameter to Evoked.plot() to conveniently highlight time periods (mne-tools#10614) MRG: Allow to pass array of "average" values to plot_evoked_topomap() (mne-tools#10610) fix: snirf length units (mne-tools#10613) minor, doc: fix subplot titles in tutorial (mne-tools#10607) Display averaged time period in Evoked topomap title (mne-tools#10606) MAINT: Fix for pydata-sphinx-theme [skip azp][skip actions][circle deploy] (mne-tools#10605) DOC: report.add_html in tutorial (mne-tools#10603) Broader support of the SNIRF file format and enable reading GowerLab data (mne-tools#10555) MRG: Recommend mamba instead of libmamba for installation (mne-tools#10597) Fix dev documentation warning [skip azp][skip actions] (mne-tools#10599) FIX cmap (mne-tools#10593) [ENH, MRG] Add interpolate bridged electrodes function (mne-tools#10587)
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Okay this is ready for review/merge from my end! |
* upstream/main: [ENH] Add sys info for mne-icalabel (mne-tools#10615)
agramfort
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note that pymeshfix is GPL licensed. Is this the first precedent in mne-python?
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Argh I did not notice :( I've removed it and just noted it as a possible way to deal with bad meshes in a tutorial. BTW my fix in the end for my bad |
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* upstream/main: (24 commits) Use less memory when loading EDF file (mne-tools#10638) BUG: fix ipython console accessibility after MNEQtBrowser in Spyder (mne-tools#10637) WIP: Fix mne.time_frequency.multitaper Nyquist adjustment slightly incorrect (mne-tools#10541) BUG: Fix bug with fNIRS reordering (mne-tools#10630) MNT: PyQt6 for pip pre 3.10 (mne-tools#10636) CI: Fix conda (mne-tools#10628) MRG: Update installer links to point to 1.0.3_0 (mne-tools#10622) [BUG, MRG] fix info write access (mne-tools#10626) [MRG] Fixed group_by titles in evoked_plot. (mne-tools#10618) [BUG, MRG] Replace image_interp with interpolation in topomap plot arguments (mne-tools#10617) MAINT: Fix timeout (mne-tools#10624) Simplify mne-tools#10619 (mne-tools#10620) Drop EEG rejection thresholds when replacing EEG with CSD channels (mne-tools#10619) Add get_montage support for fNIRS (mne-tools#10611) ENH: Improve make_head_surface options (mne-tools#10592) [ENH, MRG] Add citation for intracranial JOSS paper (mne-tools#10616) [ENH] Add sys info for mne-icalabel (mne-tools#10615) MRG: Add "highlight" parameter to Evoked.plot() to conveniently highlight time periods (mne-tools#10614) MRG: Allow to pass array of "average" values to plot_evoked_topomap() (mne-tools#10610) fix: snirf length units (mne-tools#10613) ...
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thresholdandmritomake_head_surfaceto allow using a different MRI (with a different threshold) usingmkheadsurf.make_head_surface.fix_topologyto allow fixing topology withpymeshfix.vtkimports usingvtkmodules.head-dense.fifandhead-sparse.fifwhen available (over-head.fiforouter_skin.surf) since these are more likely to be more accurate / better, asmake_scalp_surfacesis more configurable thanwatershed_bem.Todo:
vtkimports to usevtkmodules