vtk: update to 9.4.1

Remove patches that have been applied upstream.
Fix compilation issues with `clang++` version 19.
Fix new build issues with fmt 11.
Cherry-pick patches from upstream VTK-m.
Update patch to make it apply cleanly.
Update DIY to version 3.6.0 to avoid compilation issue with C++ STL from LLVM 19 (`std::char_traits<T>` can no longer be instantiated with arbitrary types).
Add patch to fix compatibility with DIY 3.
Add patch to fix build issue of the InfovisBoostGraphAlgorithms module that requires C++14 now.
Add patch for the ANARI rendering module to fix an issue with undeclared type identifiers.
Add optional dependencies for new Alembic and ANARI modules.

mingw-w64-vtk/002-llvm-19-compatibility.patch

@@ -0,0 +1,14 @@
+a template argument list is expected after a name prefixed by the template keyword
+
+diff -urN VTK-9.3.1/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/internal/VariantImplDetail.h.orig VTK-9.3.1/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/internal/VariantImplDetail.h
+--- VTK-9.3.1/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/internal/VariantImplDetail.h.orig	2024-06-28 18:00:10.000000000 +0200
++++ VTK-9.3.1/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/internal/VariantImplDetail.h	2025-01-13 15:35:29.812473900 +0100
+@@ -548,7 +548,7 @@
+         // just the one that it currently holds.
+         return f(storage.V7, std::forward<Args>(args)...);
+       default:
+-        return VariantCases<NumCases - 8>::template CastAndCall(
++        return VariantCases<NumCases - 8>::template CastAndCall<>(
+           index - 8, std::forward<Functor>(f), storage.Remaining, std::forward<Args>(args)...);
+     }
+   }

mingw-w64-vtk/003-fix-build-with-fmt-11.patch

@@ -1,40 +1,22 @@
---- a/ThirdParty/ioss/vtkioss/Ioss_IOFactory.C
-+++ b/ThirdParty/ioss/vtkioss/Ioss_IOFactory.C
+diff -urN VTK-9.4.1/ThirdParty/ioss/vtkioss/Ioss_Field.C.orig VTK-9.4.1/ThirdParty/ioss/vtkioss/Ioss_Field.C
+--- VTK-9.4.1/ThirdParty/ioss/vtkioss/Ioss_Field.C.orig	2024-12-27 18:08:14.000000000 +0100
++++ VTK-9.4.1/ThirdParty/ioss/vtkioss/Ioss_Field.C	2025-01-13 16:46:04.272364200 +0100
 @@ -12,6 +12,7 @@
- #include <cstddef> // for nullptr
+ #include <cstdint>
  #include "vtk_fmt.h"
  #include VTK_FMT(fmt/ostream.h)
-+#include VTK_FMT(fmt/ranges.h)
- #include <map>     // for _Rb_tree_iterator, etc
- #include <ostream> // for basic_ostream, etc
- #include <set>
---- a/ThirdParty/ioss/vtkioss/Ioss_StructuredBlock.C
-+++ b/ThirdParty/ioss/vtkioss/Ioss_StructuredBlock.C
-@@ -15,6 +15,7 @@
- #include <Ioss_StructuredBlock.h>
- #include "vtk_fmt.h"
- #include VTK_FMT(fmt/ostream.h)
-+#include VTK_FMT(fmt/ranges.h)
-
- #include <cstddef> // for size_t
- #include <numeric>
---- a/ThirdParty/ioss/vtkioss/Ioss_Utils.C
-+++ b/ThirdParty/ioss/vtkioss/Ioss_Utils.C
-@@ -21,6 +21,7 @@
- #include VTK_FMT(fmt/chrono.h)
++#include VTK_FMT(fmt/xchar.h)
+ #include <iostream>
+ #include <string>
+ #include <vector>
+diff -urN VTK-9.4.1/ThirdParty/ioss/vtkioss/Ioss_VariableType.C.orig VTK-9.4.1/ThirdParty/ioss/vtkioss/Ioss_VariableType.C
+--- VTK-9.4.1/ThirdParty/ioss/vtkioss/Ioss_VariableType.C.orig	2024-12-27 18:08:14.000000000 +0100
++++ VTK-9.4.1/ThirdParty/ioss/vtkioss/Ioss_VariableType.C	2025-01-13 16:47:09.758522800 +0100
+@@ -19,6 +19,7 @@
+ #include VTK_FMT(fmt/core.h)
  #include VTK_FMT(fmt/format.h)
  #include VTK_FMT(fmt/ostream.h)
-+#include VTK_FMT(fmt/ranges.h)
- #include <fstream>
++#include VTK_FMT(fmt/xchar.h)
+ #include <map>
  #include <sstream>
  #include <string>
---- a/ThirdParty/ioss/vtkioss/Ioss_ZoneConnectivity.C
-+++ b/ThirdParty/ioss/vtkioss/Ioss_ZoneConnectivity.C
-@@ -9,6 +9,7 @@
- #include <cstddef> // for size_t
- #include "vtk_fmt.h"
- #include VTK_FMT(fmt/ostream.h)
-+#include VTK_FMT(fmt/ranges.h)
- #include <string> // for string
- #include <vector> // for vector
-

mingw-w64-vtk/005-remove-unused-method-from-mir-tables.patch

@@ -0,0 +1,31 @@
+From c805a6039ea500cb96158cfc11271987c9f67aa4 Mon Sep 17 00:00:00 2001
+From: Kenneth Moreland <[email protected]>
+Date: Tue, 15 Oct 2024 13:06:36 -0400
+Subject: [PATCH] Remove unused method from MIR tables
+
+The implementation of this method was incorrect as it referenced a class
+member that does not exist. Many compilers allowed it in a templated
+class when the method was never used, but other compilers attempt to
+compile the inlined method regardless.
+
+Since the method clearly is not needed, the easy solution is to remove
+it.
+---
+ vtkm/filter/contour/worklet/mir/MIRTables.h | 5 -----
+ 1 file changed, 5 deletions(-)
+
+diff -urN VTK-9.4.1/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/filter/contour/worklet/mir/MIRTables.h.orig VTK-9.4.1/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/filter/contour/worklet/mir/MIRTables.h
+--- VTK-9.4.1/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/filter/contour/worklet/mir/MIRTables.h.orig	2024-12-27 18:08:14.000000000 +0100
++++ VTK-9.4.1/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/filter/contour/worklet/mir/MIRTables.h	2025-01-13 16:56:54.495714500 +0100
+@@ -11400,11 +11400,6 @@
+       return FacesLookup[shape];
+     }
+
+-    VTKM_EXEC vtkm::UInt8 GetPoint(vtkm::Id pointIndex) const
+-    {
+-      return this->CellFacePortal.Get(pointIndex);
+-    }
+-
+   private:
+     typename vtkm::cont::ArrayHandle<vtkm::UInt8>::ReadPortalType MIRTablesDataPortal;
+     typename vtkm::cont::ArrayHandle<vtkm::UInt16>::ReadPortalType MIRTablesIndicesPortal;

mingw-w64-vtk/006-fix-compile-error-for-contour-tree-print.patch

@@ -0,0 +1,37 @@
+From 48e385af319543800398656645327243a29babfb Mon Sep 17 00:00:00 2001
+From: Kenneth Moreland <[email protected]>
+Date: Tue, 15 Oct 2024 12:01:34 -0400
+Subject: [PATCH] Fix compile error for contour tree print
+
+A print for one of the contour tree objects was referencing members of
+itself that don't seem to exist. This causes the Intel compiler to fail
+to compile it. I'm at a loss about how any other compiler does not error
+out, but at any rate this should be correct.
+---
+ .../worklet/contourtree_distributed/HierarchicalContourTree.h | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/filter/scalar_topology/worklet/contourtree_distributed/HierarchicalContourTree.h b/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/filter/scalar_topology/worklet/contourtree_distributed/HierarchicalContourTree.h
+index a996d42928..e40d5f4f15 100644
+--- a/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/filter/scalar_topology/worklet/contourtree_distributed/HierarchicalContourTree.h
++++ b/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/filter/scalar_topology/worklet/contourtree_distributed/HierarchicalContourTree.h
+@@ -663,7 +663,7 @@ std::string HierarchicalContourTree<FieldType>::PrintDotSuperStructure(const cha
+   auto hyperarcsPortal = this->Hyperarcs.ReadPortal();
+   auto regularNodeGlobalIdsPortal = this->RegularNodeGlobalIds.ReadPortal();
+   auto whichIterationPortal = this->WhichIteration.ReadPortal();
+-  auto whichRoundPortal = this->whichRound.ReadPortal();
++  auto whichRoundPortal = this->WhichRound.ReadPortal();
+   auto superarcsPortal = this->Superarcs.ReadPortal();
+   auto superparentsPortal = this->Superparents.ReadPortal();
+   for (vtkm::Id supernode = 0; supernode < this->Supernodes.GetNumberOfValues(); supernode++)
+@@ -708,7 +708,7 @@ std::string HierarchicalContourTree<FieldType>::PrintDotSuperStructure(const cha
+     if (contourtree_augmented::NoSuchElement(superarcTo))
+     { // no superarc
+       // if it occurred on the final round, it's the global root and is shown as the NULL node
+-      if (whichRoundPortal.Get(superarcFrom) == this->NRounds)
++      if (whichRoundPortal.Get(superarcFrom) == this->NumRounds)
+       { // root node
+         outstream << "\tSN" << std::setw(1) << superarcFrom << " -> SA" << std::setw(1) << superarc
+                   << " [label=\"S" << std::setw(1) << superarc << "\",style=dotted]\n";
+-- 
+GitLab

mingw-w64-vtk/007-dll-export-some-functions.patch

@@ -40,20 +40,20 @@
    /**
     * Get component @a comp of the tuple at @a tupleIdx.
     */
--  ValueType GetTypedComponent(vtkIdType tupleIdx, int comp) const VTK_EXPECTS(0 <= tupleIdx &&
-+  VTKCOMMONCORE_EXPORT ValueType GetTypedComponent(vtkIdType tupleIdx, int comp) const VTK_EXPECTS(0 <= tupleIdx &&
-     tupleIdx < GetNumberOfTuples()) VTK_EXPECTS(0 <= comp && comp < GetNumberOfComponents())
+-  ValueType GetTypedComponent(vtkIdType tupleIdx, int comp) const
++  VTKCOMMONCORE_EXPORT ValueType GetTypedComponent(vtkIdType tupleIdx, int comp) const
+     VTK_EXPECTS(0 <= tupleIdx && GetNumberOfComponents() * tupleIdx + comp < GetNumberOfValues())
+       VTK_EXPECTS(0 <= comp && comp < GetNumberOfComponents())
    {
-     return this->Buffer->GetBuffer()[this->NumberOfComponents * tupleIdx + comp];
 @@ -116,7 +116,7 @@
    /**
     * Set component @a comp of the tuple at @a tupleIdx to @a value.
     */
--  void SetTypedComponent(vtkIdType tupleIdx, int comp, ValueType value) VTK_EXPECTS(0 <= tupleIdx &&
-+  VTKCOMMONCORE_EXPORT void SetTypedComponent(vtkIdType tupleIdx, int comp, ValueType value) VTK_EXPECTS(0 <= tupleIdx &&
-     tupleIdx < GetNumberOfTuples()) VTK_EXPECTS(0 <= comp && comp < GetNumberOfComponents())
+-  void SetTypedComponent(vtkIdType tupleIdx, int comp, ValueType value)
++  VTKCOMMONCORE_EXPORT void SetTypedComponent(vtkIdType tupleIdx, int comp, ValueType value)
+     VTK_EXPECTS(0 <= tupleIdx && GetNumberOfComponents() * tupleIdx + comp < GetNumberOfValues())
+       VTK_EXPECTS(0 <= comp && comp < GetNumberOfComponents())
    {
-     const vtkIdType valueIdx = tupleIdx * this->NumberOfComponents + comp;
 @@ -260,11 +260,11 @@
      vtkIdType dstStart, vtkIdType n, vtkIdType srcStart, vtkAbstractArray* source) override;
    // MSVC doesn't like 'using' here (error C2487). Just forward instead:
@@ -80,9 +80,9 @@
      if (!strcmp(thisClassName, type))                                                              \
      {                                                                                              \
 @@ -836,7 +836,7 @@
-     return superclass::IsTypeOf(type);                                                             \
+   {                                                                                                \
+     return this->thisClass::IsTypeOf(type);                                                        \
    }                                                                                                \
-   vtkTypeBool IsA(const char* type) override { return this->thisClass::IsTypeOf(type); }           \
 -  static thisClass* SafeDownCast(vtkObjectBase* o)                                                 \
 +  static VTKCOMMONCORE_EXPORT thisClass* SafeDownCast(vtkObjectBase* o)                            \
    {                                                                                                \