Updates after repo merge

.cicd/Jenkinsfile

@@ -0,0 +1,170 @@
+pipeline {
+    agent none
+
+    options {
+        skipDefaultCheckout(true)
+    }
+
+    parameters {
+        // Allow job runner to filter based on platform
+        // choice(name: 'SRW_PLATFORM_FILTER', choices: ['all', 'cheyenne', 'gaea', 'hera', 'jet', 'orion', 'pcluster_noaa_v2_use1', 'azcluster_noaa', 'gcluster_noaa_v2_usc1'], description: 'Specify the platform(s) to use')
+        choice(name: 'SRW_PLATFORM_FILTER', choices: ['all', 'cheyenne', 'gaea', 'hera', 'jet', 'orion'], description: 'Specify the platform(s) to use')
+        // Allow job runner to filter based on compiler
+        choice(name: 'SRW_COMPILER_FILTER', choices: ['all', 'gnu', 'intel'], description: 'Specify the compiler(s) to use to build')
+    }
+
+    stages {
+        /*
+        // Start the NOAA Parallel Works clusters, if necessary
+        stage('Start Parallel Works Clusters') {
+            matrix {
+                // Start all clusters by default or only the specified cluster given by SRW_PLATFORM_FILTER
+                when {
+                    anyOf {
+                        expression { params.SRW_PLATFORM_FILTER == 'all' }
+                        expression { params.SRW_PLATFORM_FILTER == env.SRW_PLATFORM }
+                    }
+                }
+
+                axes {
+                    axis {
+                        name 'SRW_PLATFORM'
+                        values 'pcluster_noaa_v2_use1', 'azcluster_noaa', 'gcluster_noaa_v2_usc1'
+                    }
+                }
+
+                stages {
+                    // Call the parallel-works-jenkins-client/start-cluster job using SRW_PLATFORM for the
+                    // PW_CLUSTER_NAME parameter
+                    stage('Start Cluster') {
+                        steps {
+                            build job: 'parallel-works-jenkins-client/start-cluster', parameters: [string(name: 'PW_CLUSTER_NAME', value: env.SRW_PLATFORM), string(name: 'PW_CLUSTER_SSH_KEY', value: '~/.ssh/id_rsa'), string(name: 'JAVA_VERSION', value: '11')]
+                        }
+                    }
+                }
+            }
+        }
+        */
+
+        // Build and test the SRW application on all supported platforms using the supported compilers for each platform
+        stage('Build and Test') {
+            matrix {
+                // Run on all platform/compiler combinations by default or build and test only on the platform(s) and
+                // compiler(s) specified by SRW_PLATFORM_FILTER and SRW_COMPILER_FILTER
+                when {
+                    allOf {
+                        anyOf {
+                            expression { params.SRW_PLATFORM_FILTER == 'all' }
+                            expression { params.SRW_PLATFORM_FILTER == env.SRW_PLATFORM }
+                        }
+
+                        anyOf {
+                            expression { params.SRW_COMPILER_FILTER == 'all' }
+                            expression { params.SRW_COMPILER_FILTER == env.SRW_COMPILER }
+                        }
+                    }
+                }
+
+                axes {
+                    axis {
+                        name 'SRW_PLATFORM'
+                        // values 'cheyenne', 'gaea', 'hera', 'jet', 'orion', 'pcluster_noaa_v2_use1', 'azcluster_noaa', 'gcluster_noaa_v2_usc1'
+                        values 'cheyenne', 'gaea', 'hera', 'jet', 'orion'
+                    }
+
+                    axis {
+                        name 'SRW_COMPILER'
+                        values 'gnu', 'intel'
+                    }
+                }
+
+                excludes {
+                    // Exclude GNU from platforms that don't support it
+                    exclude {
+                            axis {
+                            name 'SRW_PLATFORM'
+                            values 'gaea', 'hera', 'jet', 'orion'
+                        }
+
+                        axis {
+                            name 'SRW_COMPILER'
+                            values 'gnu'
+                        }
+                    }
+                }
+
+                agent {
+                    label env.SRW_PLATFORM
+                }
+
+                environment {
+                    BRANCH_NAME_ESCAPED = env.BRANCH_NAME.replace('/', '_')
+                    BUILD_VERSION = "${env.SRW_PLATFORM}-${env.SRW_COMPILER}-${env.BRANCH_NAME_ESCAPED}-${env.BUILD_NUMBER}"
+                    BUILD_NAME = "ufs-srweather-app_${env.BUILD_VERSION}"
+                }
+
+                stages {
+                    // Clean the workspace, checkout the repository, and run checkout_externals
+                    stage('Initialize') {
+                        steps {
+                            echo "Initializing SRW (${env.SRW_COMPILER}) build environment on ${env.SRW_PLATFORM}"
+                            cleanWs()
+                            checkout scm
+                            sh '"${WORKSPACE}/manage_externals/checkout_externals"'
+                        }
+                    }
+
+                    // Run the unified build script; if successful create a tarball of the build and upload to S3
+                    stage('Build') {
+                        steps {
+                            echo "Building SRW (${env.SRW_COMPILER}) on ${env.SRW_PLATFORM}"
+                            sh 'bash --login "${WORKSPACE}/.cicd/scripts/srw_build.sh"'
+                        }
+
+                        post {
+                            success {
+                                sh 'tar --create --gzip --verbose --file "${WORKSPACE}/${BUILD_NAME}.tgz" bin include lib share'
+                                s3Upload consoleLogLevel: 'INFO', dontSetBuildResultOnFailure: false, dontWaitForConcurrentBuildCompletion: false, entries: [[bucket: 'woc-epic-jenkins-artifacts', excludedFile: '', flatten: false, gzipFiles: false, keepForever: false, managedArtifacts: true, noUploadOnFailure: true, selectedRegion: 'us-east-1', showDirectlyInBrowser: false, sourceFile: "${env.BUILD_NAME}.tgz", storageClass: 'STANDARD', uploadFromSlave: false, useServerSideEncryption: false]], pluginFailureResultConstraint: 'FAILURE', profileName: 'main', userMetadata: []
+                            }
+                        }
+                    }
+
+                    // Run the unified test script
+                    stage('Test') {
+                        steps {
+                            echo "Testing SRW (${env.SRW_COMPILER}) on ${env.SRW_PLATFORM}"
+                            sh 'bash --login "${WORKSPACE}/.cicd/scripts/srw_test.sh"'
+                        }
+                    }
+                }
+            }
+        }
+    }
+
+    /*
+    post {
+        always {
+            // Stop any Parallel Works clusters that were started during the pipeline execution
+            script {
+                def pw_clusters = ['pcluster_noaa_v2_use1', 'azcluster_noaa', 'gcluster_noaa_v2_usc1']
+                def clusters = []
+
+                // Determine which clusters need to be stopped, if any
+                if (params.SRW_PLATFORM_FILTER == 'all') {
+                    clusters = pw_clusters
+                } else if (params.SRW_PLATFORM_FILTER in pw_clusters) {
+                    clusters = [params.SRW_PLATFORM_FILTER]
+                } else {
+                    echo 'No Parallel Works clusters were used in build'
+                }
+
+                for (int i = 0; i < clusters.size(); ++i) {
+                    // Call the parallel-works-jenkins-client/stop-cluster job using clusters[i] for the
+                    // PW_CLUSTER_NAME parameter
+                    build job: 'parallel-works-jenkins-client/stop-cluster', parameters: [string(name: 'PW_CLUSTER_NAME', value: clusters[i])]
+                }
+            }
+        }
+    }
+    */
+}

.cicd/scripts/srw_build.sh

@@ -0,0 +1,31 @@
+#!/usr/bin/env bash
+#
+# A unified build script for the SRW application. This script is expected to
+# build the SRW application for all supported platforms.
+#
+set -e -u -x
+
+script_dir="$(cd -- "$(dirname -- "${BASH_SOURCE[0]}")" > /dev/null 2>&1 && pwd)"
+
+# Get repository root from Jenkins WORKSPACE variable if set, otherwise, set
+# relative to script directory.
+declare workspace
+if [[ -n "${WORKSPACE}" ]]; then
+    workspace="${WORKSPACE}"
+else
+    workspace="$(cd -- "${script_dir}/../.." && pwd)"
+fi
+
+build_dir="${workspace}/build"
+
+# Set build related environment variables and load required modules.
+source "${workspace}/etc/lmod-setup.sh" "${SRW_PLATFORM}"
+module use "${workspace}/modulefiles"
+module load "build_${SRW_PLATFORM}_${SRW_COMPILER}"
+
+# Compile SRW application and install to repository root.
+mkdir "${build_dir}"
+pushd "${build_dir}"
+    cmake -DCMAKE_INSTALL_PREFIX="${workspace}" -DENABLE_RRFS=on "${workspace}"
+    make -j "${MAKE_JOBS}"
+popd

.cicd/scripts/srw_test.sh

@@ -0,0 +1,21 @@
+#!/usr/bin/env bash
+#
+# A unified test script for the SRW application. This script is expected to
+# test the SRW application for all supported platforms. NOTE: At this time,
+# this script is a placeholder for a more robust test framework.
+#
+set -e -u -x
+
+script_dir="$(cd -- "$(dirname -- "${BASH_SOURCE[0]}")" > /dev/null 2>&1 && pwd)"
+
+# Get repository root from Jenkins WORKSPACE variable if set, otherwise, set
+# relative to script directory.
+declare workspace
+if [[ -n "${WORKSPACE}" ]]; then
+    workspace="${WORKSPACE}"
+else
+    workspace="$(cd -- "${script_dir}/../.." && pwd)"
+fi
+
+# Verify that there is a non-zero sized weather model executable.
+[[ -s "${workspace}/bin/ufs_model" ]] || [[ -s "${workspace}/bin/NEMS.exe" ]]

.github/CODEOWNERS

@@ -3,8 +3,7 @@
 
 # These owners will be the default owners for everything in the repo.
 #*       @defunkt
-*       @JulieSchramm @mkavulich @gsketefian @JeffBeck-NOAA @RatkoVasic-NOAA @BenjaminBlake-NOAA
-
+*       @mkavulich @gsketefian @JeffBeck-NOAA @RatkoVasic-NOAA @BenjaminBlake-NOAA @ywangwof @chan-hoo @panll @christinaholtNOAA @christopherwharrop-noaa @danielabdi-noaa @mark-a-potts @jkbk2004 @willmayfield @dmwright526 @gspetro-NOAA @natalie-perlin @EdwardSnyder-NOAA
 # Order is important. The last matching pattern has the most precedence.
 # So if a pull request only touches javascript files, only these owners
 # will be requested to review.

.github/ISSUE_TEMPLATE/bug_report.md

@@ -0,0 +1,44 @@
+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: bug
+assignees: ''
+
+---
+
+<!-- Please remove unwanted/unrelated/irrelevant information such as comments.
+Please copy any output files into a public Github gist (see https://gist.github.com/) and link to the gist, rather than relying on paths that might change. -->
+
+Your bug may already be reported!
+Please search on the [Issue tracker](https://github.com/ufs-community/ufs-srweather-app/issues) before creating a new issue. 
+If an issue already exists, please use that issue to add any additional information.
+
+## Expected behavior
+<!-- Tell us what should happen. -->
+
+## Current behavior
+<!-- Tell us what happens instead of the expected behavior. -->
+
+## Machines affected
+<!--- Please provide any relevant information about your setup, including machine/compiler combination. -->
+<!-- Reference other issues or PRs in other repositories that this issue is related to, and how they are related. -->
+
+## Steps To Reproduce
+<!--- Provide a link to a live example, a code snippet, and/or an explicit set of steps to reproduce this bug.
+1. Step 1
+2. Step 2
+3. See the bug... -->
+
+## Detailed Description of Fix (optional)
+<!--- Provide a detailed description of the change or addition you are proposing. -->
+
+## Additional Information (optional)
+<!-- Any other relevant information that we should know to correctly understand and reproduce the issue. 
+Please describe in as much detail as possible. -->
+
+## Possible Implementation (optional)
+<!--- Suggest an idea for implementing addition or change. -->
+
+## Output (optional)
+<!-- Please include any relevant log files, screenshots or other output here. -->

.github/ISSUE_TEMPLATE/feature_request.md

@@ -0,0 +1,41 @@
+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: enhancement
+assignees: ''
+
+---
+
+<!-- Please remove unwanted/unrelated/irrelevant information such as comments.
+Please copy any output files into a public Github gist (see https://gist.github.com/) 
+and link to the gist, rather than relying on paths that might change. -->
+
+Your issue may already be reported!
+Please search on the [Issue tracker](https://github.com/ufs-community/ufs-srweather-app/issues) before creating a new issue. If an issue already exists, please use that issue to add any additional information.
+
+## Description
+<!-- Provide a clear and concise description of the problem to be solved. -->
+<!-- What problem needs to be fixed? -->
+<!-- What new capability needs to be added? --> 
+
+## Solution
+<!-- Add a clear and concise description of the proposed solution. -->
+
+## Requirements**
+<!-- What does the new code need to accomplish? Does it require an update 
+to a version of software (e.g. modules of NCEPLibs, NetCDF, etc.), components 
+(e.g. UFS-Weather-Model), or system tools (e.g. python3) -->
+
+## Acceptance Criteria (Definition of Done)
+<!-- What does it mean for this feature to be finished? -->
+
+## Dependencies (optional)
+<!-- Directly reference any issues or PRs in this or other repositories that this 
+issue is related to, and describe how they are related. -->
+<!-- Does this block progress on other issues? Add this issue as a dependency to 
+other issues as appropriate e.g. #IssueNumber has a dependency on this issue -->
+
+## Alternative Solutions (optional)
+<!-- If applicable, add a description of any alternative solutions or features 
+you've considered. -->

.github/ISSUE_TEMPLATE/textonly_request.md

@@ -0,0 +1,20 @@
+---
+name: Text-only request
+about: Suggest an idea for this project
+title: ''
+labels: textonly
+assignees: ''
+
+---
+
+## Description
+<!-- Provide a clear and concise description of the problem to be solved. -->
+
+## Solution
+<!-- Add a clear and concise description of the proposed solution. -->
+
+## Alternatives (optional)
+<!-- If applicable, add a description of any alternative solutions or features you've considered. -->
+
+## Related to (optional)
+<!-- Directly reference any issues or PRs in this or other repositories that this is related to, and describe how they are related. -->