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smart-on-fhir/cumulus-etl
smart-on-fhir/cumulus-etl PublicExtract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis
1,137 contributions in the last year
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Contribution activity
April 2025
Created 58 commits in 10 repositories
Created a pull request in flathub/org.gnome.DejaDup that received 2 comments
Opened 24 other pull requests in 9 repositories
smart-on-fhir/cumulus-etl
11
merged
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build: set docker version correctly
This contribution was made on Apr 24
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build: set version dynamically from tag rather than __init__.py
This contribution was made on Apr 24
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fix(export): use a consistent exportId across export restarts
This contribution was made on Apr 22
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fix(upload-notes): don't bail when errors happen
This contribution was made on Apr 18
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fix(deid): Strip out code/display for urn:oid:1.2.840.114350.*
This contribution was made on Apr 17
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feat(upload-notes): add patient ID info to label studio metadata
This contribution was made on Apr 16
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fix: only use v2 scopes if no other choice
This contribution was made on Apr 11
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Update ruff to 0.11.x
This contribution was made on Apr 7
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feat: add --type and --type-filter to export subcommand
This contribution was made on Apr 3
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feat: stop filling export logs with status_progress messages
This contribution was made on Apr 3
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fix: report an accurate bulk export duration in the logs
This contribution was made on Apr 2
smart-on-fhir/rapid-elastic
3
merged
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Move resources into package
This contribution was made on Apr 16
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Add packaging and a CLI
This contribution was made on Apr 15
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Add barebones server setup docs
This contribution was made on Apr 10
smart-on-fhir/cumulus-library-data-metrics
2
merged
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Extract status inline, instead of as a separate joined table
This contribution was made on Apr 15
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Some small memory-oriented fixes
This contribution was made on Apr 8
smart-on-fhir/client-py
2
merged
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Regenerate docs for 4.3.1
This contribution was made on Apr 3
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Update docs instructions
This contribution was made on Apr 3
smart-on-fhir/good-neighbor
2
merged
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Tweak header size
This contribution was made on Apr 2
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Some further cleanup and two-column performance layout
This contribution was made on Apr 1
smart-on-fhir/cumulus-fhir-support
1
merged
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feat(json): add transparent support for .gz files
This contribution was made on Apr 23
smart-on-fhir/cumulus-library
1
merged
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duckdb: don't preserve order, which should help with memory
This contribution was made on Apr 9
restic/restic
1
open
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backend/local: ignore chmod "not supported" errors
This contribution was made on Apr 4
smart-on-fhir/chart-review
1
merged
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Add initial 3-way annotator McNemar scoring
This contribution was made on Apr 3
Reviewed 17 pull requests in 7 repositories
smart-on-fhir/cumulus-library
5 pull requests
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Ignore customer specific Epic OID
This contribution was made on Apr 17
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v4.5
This contribution was made on Apr 14
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Added obsservation component code detection
This contribution was made on Apr 14
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Uprev ruff
This contribution was made on Apr 8
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Added network arg to upload command
This contribution was made on Apr 7
smart-on-fhir/rapid-elastic
4 pull requests
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17 ppv sampling balance
This contribution was made on Apr 17
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Issue 3 sql compare
This contribution was made on Apr 14
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Disease names cleanup
This contribution was made on Apr 14
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Customize elastic fields
This contribution was made on Apr 11
smart-on-fhir/chart-review
2 pull requests
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Bugfix: Updates mcnemar command to use
--continuity-correction
This contribution was made on Apr 25 -
Add initial 3-way annotator McNemar scoring
This contribution was made on Apr 14
smart-on-fhir/cumulus-aggregator
2 pull requests
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Better handling of per-site flat files
This contribution was made on Apr 23
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Post proxy maintenance
This contribution was made on Apr 16
smart-on-fhir/cumulus-etl
2 pull requests
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fix(export): use a consistent exportId across export restarts
This contribution was made on Apr 22
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fix: report an accurate bulk export duration in the logs
This contribution was made on Apr 2
smart-on-fhir/cumulus-library-data-metrics
1 pull request
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Extract status inline, instead of as a separate joined table
This contribution was made on Apr 15
smart-on-fhir/client-py
1 pull request
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Update docs instructions
This contribution was made on Apr 3
Created an issue in restic/restic that received 1 comment
"chmod: operation not supported" errors on WebDAV and SMB
Output of restic version
restic 0.18.0 compiled with go1.24.1 on linux/amd64
What backend/service did you use to store the repository?
Local (but b…
1
comment
Opened 1 other issue in 1 repository
smart-on-fhir/cumulus-etl
1
open
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The ETL should retry failures during authentication
This contribution was made on Apr 3