BioParseR - A Reader/writer/parser for SAM/BAM/VCF.

BioParseR is a fast, lightweight Rust command-line application for parsing and inspecting common bioinformatics file formats — SAM, BAM, and VCF — using the powerful noodles library ecosystem(shout out to it's creators❤️).

Features

• Parse SAM (Sequence Alignment/Map) files
• Parse BAM (Binary Alignment/Map) files
• Parse VCF (Variant Call Format) files
• View basic header information and the first few records
• Written in Rust for performance and safety

To test those features, use the files provided in the examples folder.

🦀 Installation

Prerequisites

• Rust (≥ 1.80)
• Cargo (comes with Rust)
• noodles

Clone and build

git clone https://github.com/mikeph52/BioParseR.git
cd BioParseR
cargo build --release

Stay tuned for more updates in the feature!!