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PSI M2 results update #105

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merged 2 commits into from
Sep 3, 2024
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@jturtle jturtle commented Aug 30, 2024

We corrected issues with pairing when generating trajectories. Overall scenario results are largely unchanged, but trajectories are now properly paired. Pairing spans horizons, age groups, and vaccination axis (not locations or influenza sub-type).

Only hospitalizations have been submitted (not mortality).

We found and corrected bugs that were causing inconsistent sampling of initial conditions and parameters across pairings.  The general results are largely unchanged, but trajectory pairings have been corrected.
Correct issue with pairing when generating trajectories.
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Run validation on files: 2024-08-11-PSI-M2.gz.parquet

Required values:

❌ Error 006: The submission is missing some required values, please check:
origin_date: 2024-08-11
scenario_id: c("A-2024-08-01", "C-2024-08-01", "E-2024-08-01", "B-2024-08-01", "D-2024-08-01", "F-2024-08-01")
target: inc death
horizon: c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43")
age_group: 0-130
location: US

Columns:

No errors or warnings found on the column names and numbers

Scenarios:

No errors or warnings found on scenario name and scenario id columns

Origin Date Column:

No errors or warnings found on the column 'origin_date'

Value and Type Columns:

No errors or warnings found on Value and Type columns

Target Columns:

❌ Error 602: The data frame does not contain projections for 'inc death' target(s).
🟡 Warning 602: No value found associated with the targets: inc death (optional), cum death (optional); output_type: quantile.
🟡 Warning 602: No value found associated with the targets: inc hosp (optional), cum hosp (optional); output_type: quantile.
🟡 Warning 602: No value found associated with the targets: peak size hosp (optional); output_type: quantile.
🟡 Warning 602: No value found associated with the targets: peak time hosp (optional); output_type: cdf.

Locations:

No errors or warnings found on Location

Sample:

Column Pairing information:

Run grouping pairing:
c("scenario_id (A-2024-08-01, C-2024-08-01, E-2024-08-01)", "horizon"),
c("scenario_id (B-2024-08-01, D-2024-08-01, F-2024-08-01)", "horizon")
Stochastic run pairing:
No stochasticity
Number of Samples: 300

Quantiles:

No errors or warnings found on quantiles values and format

Age Group:

No errors or warnings found on Age_group

@LucieContamin LucieContamin merged commit c5e7761 into midas-network:main Sep 3, 2024
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2 participants