[many ports] Updates 2019.04.19

[ras0219-msft]

No description provided.

[PhoebeHui]

It only has itk and vxl failed here, @Rastaban, I can't reproduce itk and vxl failure locally, could you help have a look?

vxl: I didn't find the vxl failures logs, I verified it on x86-windows, x64-windows and linux, all build successfully.
itk: it has failures logs that says compile failed on linux, however, i didn't reproduce it locally with gcc 5.4.0 and 7.3.0. they are build successfully.
They has same dependency port libpng changed here, but there is no proof it related to the failures.

The latest failure:
NEW baseline job: 2610544
NEW baseline commitid: e9f1c38

x64-windows	master	test	notes
vxl	Pass	Fail	Regression

x64-windows-static	master	test	notes
vxl	Pass	Fail	Regression

x64-osx	master	test	notes
gdcm2	Skip	Pass
itk	Pass	Fail	Regression
vxl	Pass	Fail	Regression
openjpeg	Fail	Pass

arm64-windows had no regressionsvcpkg

x86-windows	master	test	notes
vxl	Pass	Fail	Regression

x64-linux	master	test	notes
gdcm2	Skip	Pass
itk	Pass	Fail	Regression
vxl	Pass	Fail	Regression
openjpeg	Fail	Pass

[ras0219-msft]

The vxl failure had this message in build 2606930 x64-linux:

Starting package 256/310: vxl:x64-linux
Building package vxl[core]:x64-linux...
Could not locate cached archive: /home/vcpkg/myagent/_work/1/s/archives/79/79efb4f56c93a39c5ad97e05b8e58f1921caddc9.zip
CMake Error at ports/vxl/portfile.cmake:4 (message):
  Can't build VXL with non built-in OpenJpeg in current version.  Please
  remove OpenJpeg, and try install VXL again.
Call Stack (most recent call first):
  scripts/ports.cmake:71 (include)


Error: Building package vxl:x64-linux failed with: BUILD_FAILED

and the same for x64-windows:

Starting package 323/358: vxl:x64-windows
Building package vxl[core]:x64-windows...
Could not locate cached archive: C:\vsts\_work\2\s\archives\80\8029945bd5a1d7e44721c95100692c3582813739.zip
CMake Error at ports/vxl/portfile.cmake:4 (message):
  Can't build VXL with non built-in OpenJpeg in current version.  Please
  remove OpenJpeg, and try install VXL again.
Call Stack (most recent call first):
  scripts/ports.cmake:71 (include)


Error: Building package vxl:x64-windows failed with: BUILD_FAILED
Elapsed time for package vxl:x64-windows: 1.241 s

We can therefore ignore the vxl failure for now.

The itk:x64-linux failure should have produced log files -- can you investigate those issues please?

[PhoebeHui]

@ras0219-msft, we still can’t repro ITK failures locally, same OS, gcc and cmake revision: Ubuntu 18.04 + gcc 7.3.0 + cmake3.14.0 with CI test machine, everything build successfully locally, we have no idea about the this.

Checked 'opj_stream_create’ in lib/libitkgdcmopenjp2-5.0.a, not sure if lib/libitkgdcmopenjp2-5.0.a generated correctly in CI test machine.

Failures:
/home/vcpkg/myagent/_work/1/s/buildtrees/itk/ITK/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat/gdcmJPEG2000Codec.cxx:368: error: undefined reference to 'opj_stream_create'
/home/vcpkg/myagent/_work/1/s/buildtrees/itk/ITK/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat/gdcmJPEG2000Codec.cxx:374: error: undefined reference to 'opj_stream_set_user_data'
…

[Rastaban]

resolved merge conflict with cctz

[Rastaban]

itk went from pass->fail and openjpeg went from fail->pass on both Linux and OSX. I suspect there is a conflict between those ports. Are you able to reproduce the itk failure if you install openjpeg first? And conversly, are you able to install openjpeg if itk is installed first?

[PhoebeHui]

@Rastaban, thanks for your guideline!
Install itk first: itk pass, and openjpeg failed
Install openjpeg first: openjpeg pass, itk failed.

They failed due to libopenjp2.pc conflict, Both 2 ports installed libopenjp2.pc, however the failures are different from the failure logs that CI provided.

Failure:

• Performing post-build validation done
  Building package itk[core]:x64-linux... done
  Installing package itk[core]:x64-linux...
  The following files are already installed in /home/vwangli/Phoebe/Robert/vcpkg/installed/x64-linux and are in conflict with itk:x64-linux
  Installed by openjpeg:x64-linux
  debug/lib/pkgconfig/libopenjp2.pc
  lib/pkgconfig/libopenjp2.pc

I will undo openjpeg changes here, and summit a separate PR for it.

[PhoebeHui]

@Rastaban, itk still failed on osx, could you help have a look?

[PhoebeHui]

All failures resolved here, see related separate PRs [cctz, rocksdb, oepnjpeg/itk].