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54 followers · 45 following
  • Wellcome Trust Sanger Institute
  • Cambridge, UK

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Achievement: Pair Extraordinairex4Achievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Achievements

Achievement: Pair Extraordinairex4Achievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

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@VertebrateResequencing

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  • vgp.github.io Public

    Forked from VGP/vgp.github.io
    CSS MIT License Updated Feb 9, 2019

  • samtools Public

    Forked from samtools/samtools
    C 2 MIT License Updated Aug 14, 2018

  • DAZZ_DB Public

    Forked from thegenemyers/DAZZ_DB

    The Dazzler Data Base

    C Other Updated Mar 14, 2018

  • gi2017-vgp-poster Public

    Scaling up reference quality assembly of vertebrate genomes

    TeX 1 Updated Nov 3, 2017

  • minimap2 Public

    Forked from lh3/minimap2

    A fast pairwise aligner for genomic and spliced nucleotide sequences

    C 1 MIT License Updated Oct 12, 2017

  • www.htslib.org Public

    Forked from samtools/www.htslib.org

    The http://www.htslib.org/ web site

    HTML Updated Oct 3, 2017

  • vgp-assembly Public

    Forked from VGP/vgp-assembly

    VGP repository for the genome assembly working group

    Updated Sep 22, 2017

  • capmq Public

    Simple program to cap mapping quality in a given alignment file

    C 3 2 Other Updated Sep 9, 2017

  • miniasm Public

    Forked from lh3/miniasm

    Ultrafast de novo assembly for long noisy reads (though having no consensus step)

    TeX 1 MIT License Updated Jul 18, 2017

  • biogenomics-2017-vgp-poster Public

    Plans for scaling vertebrate genome sequencing and assembly at the Sanger Institute

    TeX Updated Mar 14, 2017

  • pbwt Public

    Forked from richarddurbin/pbwt
    C Updated Jan 21, 2017

  • crumble Public

    Forked from jkbonfield/crumble

    Exploration of controlled loss of quality values for compressing CRAM files

    C Updated Dec 14, 2016

  • freebayes Public

    Forked from freebayes/freebayes

    Bayesian haplotype-based polymorphism discovery and genotyping.

    C++ 1 MIT License Updated Sep 30, 2016

  • bgt Public

    Forked from lh3/bgt

    Flexible genotype query among 30,000+ samples whole-genome

    C MIT License Updated May 6, 2016

  • bcftools Public

    Forked from samtools/bcftools
    C Updated Apr 27, 2016

  • htslib Public

    Forked from samtools/htslib
    C Updated Feb 15, 2016

  • hapdip Public

    Forked from lh3/hapdip

    The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data

    JavaScript Updated May 26, 2015

  • bog_2015_poster Public

    64,976 whole genome haplotypes from the Haplotype Reference Consortium and efficient algorithms to use them

    TeX 5 Updated May 6, 2015

  • phd_thesis Public

    TeX Updated May 4, 2015

  • vg Public

    Forked from vgteam/vg

    tools for working with variant graphs

    C++ MIT License Updated Mar 23, 2015

  • bgzeof Public

    Detect truncation of BGZF files by checking the EOF marker exists

    C MIT License Updated Feb 25, 2015

  • bcftools_plugins Public

    C Updated Feb 18, 2015

  • bwa Public

    Forked from lh3/bwa

    Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

    C GNU General Public License v3.0 Updated Dec 2, 2014

  • hrc-release1 Public

    Setup for genotype likelihood calculation for the Haplotype Reference Consortium Release 1

    1 2 Updated Jul 25, 2014

  • tabix Public

    Forked from samtools/tabix
    C Updated Jan 28, 2014

  • sga Public

    Forked from jts/sga
    C++ Updated Jul 26, 2013