install error about hdf5

[shiyi-pan]

Hi, when i install the blasr, I got an error .
when I installed hdf5 , there is no file named hdf5_cpp , my hdf5 version is 1.8.21 . could you help me fix this problem , thank you very much :

make[1]: Entering directory /ds3512/home/panyp/NN1138-2/smartie-sv/src/blasr' make[2]: Entering directory /ds3512/home/panyp/NN1138-2/smartie-sv/src/blasr/alignment'
g++ -O3 -Wno-div-by-zero -I ../common -I /net/eichler/vol5/home/mchaisso/software/hdf/include/ -fpermissive -mtune=native -I ../common -I /net/eichler/vol5/home/mchaisso/software/hdf/include/ bin/Blasr.o -L/net/eichler/vol5/home/mchaisso/software/hdf/lib -lhdf5_cpp -lhdf5 -lz -lpthread -ldl -lrt -o bin/blasr
/usr/bin/ld: cannot find -lhdf5_cpp
collect2: ld returned 1 exit status
make[2]: *** [bin/blasr] Error 1
make[2]: Leaving directory /ds3512/home/panyp/NN1138-2/smartie-sv/src/blasr/alignment' make[2]: Entering directory /ds3512/home/panyp/NN1138-2/smartie-sv/src/blasr/sequtils'

[mchaisso]

Hi, blasr is no longer supported. We recommend lra: https://github.com/ChaissonLab/LRA Best, -Mark

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On Wed, Nov 11, 2020 at 4:51 AM shiyi-pan ***@***.***> wrote: Hi, when i install the blasr, I got an error . when I installed hdf5 , there is no file named hdf5_cpp , my hdf5 version is 1.8.21 . could you help me fix this problem , thank you very much : make[1]: Entering directory /ds3512/home/panyp/NN1138-2/smartie-sv/src/blasr' make[2]: Entering directory /ds3512/home/panyp/NN1138-2/smartie-sv/src/blasr/alignment' g++ -O3 -Wno-div-by-zero -I ../common -I /net/eichler/vol5/home/mchaisso/software/hdf/include/ -fpermissive -mtune=native -I ../common -I /net/eichler/vol5/home/mchaisso/software/hdf/include/ bin/Blasr.o -L/net/eichler/vol5/home/mchaisso/software/hdf/lib -lhdf5_cpp -lhdf5 -lz -lpthread -ldl -lrt -o bin/blasr /usr/bin/ld: cannot find -lhdf5_cpp collect2: ld returned 1 exit status make[2]: *** [bin/blasr] Error 1 make[2]: Leaving directory /ds3512/home/panyp/NN1138-2/smartie-sv/src/blasr/alignment' make[2]: Entering directory /ds3512/home/panyp/NN1138-2/smartie-sv/src/blasr/sequtils' — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#8>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAKPGPRZ6N6YZ5IIUAT37DDSPKCFPANCNFSM4TR6SBIA> .

[shiyi-pan]

thank you for your reply . I will try LRA. thank you very much