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Install some optional dependencies in CI #3786
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Install some optional dependencies in CI #3786
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do we want to merge this as partially complete and leave some of the todos for later? |
Thanks for asking. I was facing some resistance while trying to install them (maybe that's the reason they're not installed in CI). And what make things worse is that I never use any of these.
UPDATE: |
This reverts commit 4128284.
Summary
bader_caller
(settingPATH
to empty is easier than changing thepatch
location, and serves the same result wherebader
cannot be found inPATH
)Work in progress
boltztrap2
installable only on Ubuntupip
(uv
wouldn't work and suggest nonumpy
found when there is)Remaining
graphviz
: 186ead5, install successful, but still get SKIPPED [1] tests/analysis/test_graphs.py:341: graphviz executables not present, maybe need Installation:fatal error: 'graphviz/cgraph.h' file not found pygraphviz/pygraphviz#11 andneato
+fdp
critic2
: https://aoterodelaroza.github.io/critic2/installation/OBAlign
: should come withopenbabel
?vampire
: https://vampire.york.ac.uk/download/zeo/pyzeo
: http://www.zeoplusplus.org/download.html (last update 2017)Unsuccessful
x_trans
: http://www.icams.de/content/research/software-development/boltztrap/ (Page not found, [Ext] The link toboltztrap
is not valid anymore #3921)