style: added toml-sort pre-commit hook

.pre-commit-config.yaml

@@ -31,6 +31,12 @@ repos:
           - mdformat-gfm
           - mdformat-black
 
+  - repo: https://github.com/pappasam/toml-sort
+    rev: v0.24.2
+    hooks:
+      - id: toml-sort-fix
+        args: ["--in-place"]
+
   - repo: https://github.com/adrienverge/yamllint.git
     rev: v1.35.1
     hooks:

pyproject.toml

@@ -8,45 +8,71 @@ version = "3.0.1"
 description = "Computing landscape metrics in the Python ecosystem."
 readme = "README.md"
 authors = [
-    { name = "Martí Bosch", email = "[email protected]" },
+  {name = "Martí Bosch", email = "[email protected]"}
 ]
-license = { text = "GPL-3.0" }
+license = {text = "GPL-3.0"}
 classifiers = [
-    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
-    "Natural Language :: English",
-    "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3.9",
-    "Programming Language :: Python :: 3.10",
-    "Programming Language :: Python :: 3.11",
-    "Programming Language :: Python :: 3.12",
-    "Programming Language :: Python :: 3.13",
+  "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
+  "Natural Language :: English",
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3.9",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3.13"
 ]
 requires-python = ">=3.9"
 dependencies = [
-    "dask",
-    "geopandas",
-    "matplotlib >= 2.2",
-    "numpy >= 1.15",
-    "pandas >= 0.23",
-    "rasterio >= 1.0.0",
-    "scipy >= 1.0.0",
+  "dask",
+  "geopandas",
+  "matplotlib >= 2.2",
+  "numpy >= 1.15",
+  "pandas >= 0.23",
+  "rasterio >= 1.0.0",
+  "scipy >= 1.0.0"
 ]
 
-[project.urls]
-Repository = "https://github.com/martibosch/pylandstats"
-
 [project.optional-dependencies]
 test = ["coverage[toml]", "pytest", "pytest-cov", "ruff"]
 dev = ["build", "commitizen", "nox", "pre-commit", "pip", "toml", "twine"]
 doc = ["m2r2", "myst-nb", "pydata-sphinx-theme", "sphinx"]
 
-# [tool.setuptools]
-# ext-modules = [
-#     {name="adjacency", sources=["pylandstats/adjacency.pyx"]}
-# ]
+[project.urls]
+Repository = "https://github.com/martibosch/pylandstats"
 
-[tool.setuptools.packages.find]
-include = ["pylandstats", "pylandstats.*"]
+[tool.cibuildwheel]
+build = ["cp39-*", "cp310-*", "cp311-*", "cp312-*", "cp313-*"]
+skip = "*-musllinux_i686"
+
+[tool.codespell]
+ignore-words-list = "te"
+skip = "CHANGELOG.md"
+
+[tool.commitizen]
+name = "cz_conventional_commits"
+tag_format = "v$version"
+version_provider = "pep621"
+version_files = [
+  "pylandstats/__init__.py",
+  "pyproject.toml:version"
+]
+
+[tool.coverage.report]
+exclude_lines = [
+  "if self.debug:",
+  "pragma: no cover",
+  "raise NotImplementedError",
+  "except ModuleNotFoundError",
+  "except ImportError"
+]
+ignore_errors = true
+omit = ["tests/*", "docs/conf.py"]
+
+[tool.coverage.run]
+source = ["pylandstats"]
+
+[tool.pytest.ini_options]
+addopts = ["--import-mode=importlib"]
 
 [tool.ruff]
 line-length = 88
@@ -57,106 +83,78 @@ docstring-code-format = true
 [tool.ruff.lint]
 select = ["D", "E", "F", "I"]
 
-[tool.ruff.lint.pydocstyle]
-convention = "numpy"
-
 [tool.ruff.lint.isort]
 known-first-party = ["pylandstats"]
 
 [tool.ruff.lint.per-file-ignores]
 "**/__init__.py" = ["F403"]
-"pylandstats/landscape.py" = ["D401"]  # for metric docstrings
+"pylandstats/landscape.py" = ["D401"] # for metric docstrings
 "tests/test_pylandstats.py" = ["D"]
 
-[tool.coverage.run]
-source = ["pylandstats"]
-
-[tool.coverage.report]
-exclude_lines = [
-    "if self.debug:",
-    "pragma: no cover",
-    "raise NotImplementedError",
-    "except ModuleNotFoundError",
-    "except ImportError",
-]
-ignore_errors = true
-omit = ["tests/*", "docs/conf.py"]
-
-[tool.commitizen]
-name = "cz_conventional_commits"
-tag_format = "v$version"
-version_provider = "pep621"
-version_files = [
-    "pylandstats/__init__.py",
-    "pyproject.toml:version"
-]
-
-
-[tool.cibuildwheel]
-build = ["cp39-*", "cp310-*", "cp311-*", "cp312-*", "cp313-*"]
-skip = "*-musllinux_i686"
-
-[tool.codespell]
-ignore-words-list = "te"
-skip = "CHANGELOG.md"
+[tool.ruff.lint.pydocstyle]
+convention = "numpy"
 
-[tool.pytest.ini_options]
-addopts = ["--import-mode=importlib"]
+[tool.setuptools.packages.find]
+include = ["pylandstats", "pylandstats.*"]
 
 [tool.tox]
 env_list = [
-    "lint",
-    "py39",
-    "py310",
-    "py311",
-    "py312",
-    "py313",
+  "lint",
+  "py39",
+  "py310",
+  "py311",
+  "py312",
+  "py313"
 ]
 requires = [
-    "tox>=4.19",
+  "tox>=4.19"
 ]
 
-[tool.tox.gh.python]
-"3.13" = ["3.13", "lint"]
-"3.12" = ["3.12"]
-"3.11" = ["3.11"]
-"3.10" = ["3.10"]
-"3.9" = ["3.9"]
+[tool.tox.env.lint]
+commands = [
+  [
+    ["python", "-m", "build"],
+    ["sphinx-build", "docs", "docs/_build"],
+    ["twine", "check", "dist/*"]
+  ]
+]
+extras = [
+  "dev",
+  "doc",
+  "test"
+]
+whitelist_externals = [
+  "build",
+  "sphinx-build",
+  "twine"
+]
 
 [tool.tox.env_run_base]
-commands = [[
+commands = [
+  [
     "pytest",
     "-s",
     "--cov=pylandstats",
     "--cov-append",
     "--cov-report=xml",
     "--cov-report",
     "term-missing",
-    "tests",
-]]
+    "tests"
+  ]
+]
 conda_deps = [
-    "gdal>=3.3",
+  "gdal>=3.3"
 ]
 extras = [
-    "test",
+  "test"
 ]
 whitelist_externals = [
-    "pytest",
+  "pytest"
 ]
 
-[tool.tox.env.lint]
-commands = [[
-    ["python", "-m", "build"],
-    ["sphinx-build", "docs", "docs/_build"],
-    ["twine", "check", "dist/*"],
-]]
-extras = [
-    "dev",
-    "doc",
-    "test",
-]
-whitelist_externals = [
-    "build",
-    "sphinx-build",
-    "twine",
-]
+[tool.tox.gh.python]
+"3.13" = ["3.13", "lint"]
+"3.12" = ["3.12"]
+"3.11" = ["3.11"]
+"3.10" = ["3.10"]
+"3.9" = ["3.9"]