Merge pull request #878 from marrlab/miro #3652
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| name: CI | |
| on: | |
| push: | |
| branches: master | |
| pull_request: | |
| branches: master | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: Run tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.10.7 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install pytest pytest-cov pytest-shell | |
| python setup.py install | |
| - name: Install Python Poetry | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install poetry | |
| poetry install --with dev | |
| - name: test if api works | |
| run: poetry run python examples/api/jigen_dann_transformer.py | |
| - name: Generate coverage report | |
| run: rm -rf zoutput && poetry run pytest --maxfail=1 -vvv --tb=short --cov=domainlab tests/ --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| fail_ci_if_error: true | |
| env: | |
| CODECOV_TOKEN: 02ecb3ac-b7ce-4ea4-90a2-961c3d1a1030 | |
| - name: check if readme yaml works | |
| run: rm -rf zoutput && python main_out.py -c ./examples/conf/vlcs_diva_mldg_dial.yaml | |
| - name: test if examples in markdown works | |
| run: bash -x -v scripts/ci_run_examples.sh | |
| - name: test if benchmark works | |
| run: | | |
| pip install snakemake==7.32.0 && pip install pulp==2.7.0 | |
| echo "insert a shebang line (#!/bin/bash -x -v) at the beginning of the bash script" | |
| sed -i '1s/^/#!\/bin\/bash -x -v\n/' run_benchmark_standalone.sh | |
| bash -x -v run_benchmark_standalone.sh examples/benchmark/demo_shared_hyper_grid.yaml | |
| cat zoutput/benchmarks/mnist_benchmark_grid*/hyperparameters.csv | |
| cat zoutput/benchmarks/mnist_benchmark_grid*/results.csv |