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@marcusquinn marcusquinn commented Jan 25, 2026

Summary

  • Add PDF tools support with LibPDF (@libpdf/core) for form filling and digital signatures
  • Create extensible tools/pdf/ architecture for future PDF tool additions
  • Add pdf-helper.sh script for common CLI operations

Changes

New Files

  • .agent/tools/pdf/overview.md - PDF tools selection guide and quick reference
  • .agent/tools/pdf/libpdf.md - Comprehensive LibPDF usage documentation
  • .agent/scripts/pdf-helper.sh - CLI helper for PDF operations

Modified Files

  • .agent/subagent-index.toon - Added PDF tools entry (32 subagents, 21 scripts)

Features

LibPDF Capabilities:

  • Parse any PDF (graceful fallback for malformed documents)
  • Form filling (text, checkbox, radio, dropdown, signature fields)
  • Digital signatures (PAdES B-B, B-T, B-LT, B-LTA)
  • Encryption (RC4, AES-128, AES-256)
  • Incremental saves (preserve existing signatures)
  • Merge and split documents
  • Text extraction with position info
  • Font embedding (TTF/OpenType with subsetting)

Helper Script Commands:

pdf-helper.sh info <file>              # Show PDF info
pdf-helper.sh fields <file>            # List form fields
pdf-helper.sh fill <file> <json>       # Fill form from JSON
pdf-helper.sh merge <out> <files...>   # Merge PDFs
pdf-helper.sh text <file>              # Extract text
pdf-helper.sh install                  # Install @libpdf/core

Testing

  • ShellCheck passes on pdf-helper.sh
  • No secrets detected in new files
  • Documentation follows existing subagent patterns

Related

Summary by CodeRabbit

  • New Features

    • Background execution mode for the full-loop workflow with monitoring commands (view logs, check status, cancel runs)
    • PDF processing tooling with form filling, text extraction, field inspection, and document merging capabilities
  • Documentation

    • Added comprehensive guides for PDF tools, including LibPDF integration examples and usage patterns
  • Chores

    • Version bump to 2.84.0

✏️ Tip: You can customize this high-level summary in your review settings.

- Add tools/pdf/ directory with overview.md and libpdf.md subagents
- Create pdf-helper.sh script for common PDF operations (info, fields, fill, merge, text)
- Update subagent-index.toon with new PDF tools entry
- LibPDF supports: form filling, digital signatures (PAdES), encryption, merge/split
- Architecture designed for future PDF tool additions
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Summary of Changes

Hello @marcusquinn, I'm Gemini Code Assist1! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request significantly enhances the system's capabilities by introducing comprehensive PDF processing features. It establishes a dedicated tools/pdf/ directory for managing PDF-related functionalities, leveraging the powerful LibPDF library. This integration allows for a wide array of operations, from filling out forms and applying digital signatures to merging documents and extracting text, all accessible through a new, user-friendly command-line helper script.

Highlights

  • LibPDF Integration: Integrated @libpdf/core to enable comprehensive PDF functionalities, including form filling, digital signatures (PAdES B-B, B-T, B-LT, B-LTA), encryption, merging, splitting, and text extraction.
  • New PDF Tools Architecture: Introduced a new, extensible tools/pdf/ directory to house PDF-related utilities and documentation, establishing a structured approach for future PDF tool additions.
  • CLI Helper Script: Added pdf-helper.sh, a command-line script that provides convenient access to common PDF operations such as viewing document information, listing form fields, filling forms, merging PDFs, and extracting text.
  • Comprehensive Documentation: Provided detailed documentation for LibPDF (libpdf.md) covering its features, API usage, and common patterns, alongside an overview.md for tool selection and comparison with alternatives.
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Walkthrough

The PR adds PDF processing capabilities with a new helper script and documentation, introduces background execution support for full-loop workflows with monitoring commands, and bumps the version to 2.84.0 across all version files.

Changes

Cohort / File(s) Summary
PDF Processing Feature
.agent/scripts/pdf-helper.sh, .agent/tools/pdf/overview.md, .agent/tools/pdf/libpdf.md, .agent/subagent-index.toon
Introduces new PDF operations helper script with commands for info, fields, fill, merge, text extraction, and install. Detects runtime (bun or node), validates @libpdf/core availability, and executes embedded JS/TS snippets. Adds documentation covering overview, features, and comprehensive LibPDF usage patterns including form filling and digital signatures. Updates subagent index to register new PDF processing capability.
Background Execution Enhancement
.agent/scripts/full-loop-helper.sh, .agent/scripts/commands/full-loop.md
Adds background mode support for full-loop workflow with --background/--bg flag. Script now launches via nohup, manages PID file, exports environment variables, and provides log/status monitoring. New public commands: cmd_logs for tailing background logs and cmd_run_foreground for internal foreground execution hook. Documentation updated with background start guidance, monitoring commands, and foreground timeout warnings.
Version Alignment
.claude-plugin/marketplace.json, aidevops.sh, package.json, setup.sh, sonar-project.properties
Uniform version bump from 2.83.1 to 2.84.0 across all version declaration files. No functional or behavioral changes.

Sequence Diagram(s)

sequenceDiagram
    actor User
    participant full-loop-helper.sh as full-loop-helper
    participant nohup as Background Process
    participant PID File as State
    participant Logs as Log Output

    User->>full-loop-helper: start --background
    full-loop-helper->>full-loop-helper: Detect --bg flag
    full-loop-helper->>nohup: Launch with nohup
    nohup->>Logs: Redirect stdout/stderr
    full-loop-helper->>PID File: Write background PID
    nohup->>nohup: Execute _run_foreground task
    full-loop-helper-->>User: Return immediately<br/>(show logs guidance)
    
    User->>full-loop-helper: status
    full-loop-helper->>PID File: Read PID
    full-loop-helper-->>User: Report background process state

    User->>full-loop-helper: logs
    full-loop-helper->>Logs: Tail log file
    full-loop-helper-->>User: Display recent log lines

    User->>full-loop-helper: cancel
    full-loop-helper->>PID File: Read PID
    full-loop-helper->>nohup: Terminate process
    full-loop-helper->>PID File: Remove file
    full-loop-helper-->>User: Confirm cancellation
Loading

Estimated code review effort

🎯 3 (Moderate) | ⏱️ ~25 minutes

Poem

📋 Background loops now dance free,
PDFs yield to LibPDF's key,
With forms filled and signatures signed,
DevOps automation—perfectly designed! 🚀
Version 2.84, pristine and tight,
Zero tech debt shines so bright ✨

🚥 Pre-merge checks | ✅ 2 | ❌ 1
❌ Failed checks (1 warning)
Check name Status Explanation Resolution
Docstring Coverage ⚠️ Warning Docstring coverage is 75.00% which is insufficient. The required threshold is 80.00%. Write docstrings for the functions missing them to satisfy the coverage threshold.
✅ Passed checks (2 passed)
Check name Status Explanation
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check ✅ Passed The PR title accurately summarizes the main change: introducing LibPDF integration for PDF form filling and signing, which is the primary feature across new files and modifications.

✏️ Tip: You can configure your own custom pre-merge checks in the settings.


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Code Review

This pull request introduces a powerful PDF helper script and associated documentation using LibPDF. The implementation is well-structured, but I've identified a critical command injection vulnerability in the shell script that needs to be addressed. Additionally, there are a few correctness issues in the script and some inaccuracies in the documentation examples. My review provides specific suggestions to resolve these issues.

Comment on lines 84 to 102
run_script "
import { PDF } from '@libpdf/core';
import { readFileSync } from 'fs';

const bytes = readFileSync('$file');
const pdf = await PDF.load(bytes);
const pages = await pdf.getPages();
const form = await pdf.getForm();
const fields = form.getFieldNames();

console.log('File:', '$file');
console.log('Pages:', pages.length);
console.log('Form fields:', fields.length);

if (pages.length > 0) {
const { width, height } = pages[0].getSize();
console.log('Page size:', Math.round(width), 'x', Math.round(height), 'points');
}
"

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critical

This block is vulnerable to command injection. The $file variable is directly interpolated into the JavaScript string. A malicious filename containing special characters (e.g., a single quote) could break out of the string and execute arbitrary code. This is a critical security risk.

To fix this, you should pass shell variables to the script via environment variables and use single quotes for the script string to prevent shell expansion.

This same vulnerability pattern exists in cmd_fields, cmd_fill, cmd_merge, and cmd_text and must be fixed in all of them.

Here is the corrected version for cmd_info:

Suggested change
run_script "
import { PDF } from '@libpdf/core';
import { readFileSync } from 'fs';
const bytes = readFileSync('$file');
const pdf = await PDF.load(bytes);
const pages = await pdf.getPages();
const form = await pdf.getForm();
const fields = form.getFieldNames();
console.log('File:', '$file');
console.log('Pages:', pages.length);
console.log('Form fields:', fields.length);
if (pages.length > 0) {
const { width, height } = pages[0].getSize();
console.log('Page size:', Math.round(width), 'x', Math.round(height), 'points');
}
"
FILE="$file" run_script '
import { PDF } from "@libpdf/core";
import { readFileSync } from "fs";
const file = process.env.FILE;
const bytes = readFileSync(file);
const pdf = await PDF.load(bytes);
const pages = await pdf.getPages();
const form = await pdf.getForm();
const fields = form.getFieldNames();
console.log("File:", file);
console.log("Pages:", pages.length);
console.log("Form fields:", fields.length);
if (pages.length > 0) {
const { width, height } = pages[0].getSize();
console.log("Page size:", Math.round(width), "x", Math.round(height), "points");
}
'

Comment on lines 51 to 53
if $runtime -e "require('@libpdf/core')" 2>/dev/null; then
return 0
fi

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high

The check for @libpdf/core uses require(), which will fail in a Node.js ESM context. Since run_script uses import with --input-type=module, this check should also use import to be consistent and correct.

Suggested change
if $runtime -e "require('@libpdf/core')" 2>/dev/null; then
return 0
fi
if [[ "$runtime" == "bun" ]] && bun -e "import('@libpdf/core')" &>/dev/null; then
return 0
elif [[ "$runtime" == "node" ]] && node --input-type=module -e "import('@libpdf/core')" &>/dev/null; then
return 0
fi


# Merge PDFs
cmd_merge() {
local output="$1"

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medium

The merge command depends on jq to construct the JSON array of files, but the script doesn't check if jq is installed. This will cause the script to fail abruptly if jq is missing. You should add a check and provide a user-friendly error message.

Suggested change
local output="$1"
if ! command -v jq &>/dev/null; then
echo -e "${RED}Error:${NC} 'jq' is not installed. Please install it to use the merge command."
return 1
fi
local output="$1"

import { PDF, P12Signer } from '@libpdf/core';

// Load certificate from P12/PFX file
const p12Bytes = await fs.readFile('certificate.p12');

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medium

The fs.readFile function is used here without importing the fs module. This will cause a runtime error. Several other code examples in this file have the same issue (e.g., lines 300, 382, 458). Please add import * as fs from 'fs/promises'; to the relevant code blocks where file system operations are performed.


// Copy pages to new document
const newPdf = PDF.create();
const [page1, page2] = await pdf.copyPages(pdf, [0, 1]);

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medium

The usage of copyPages appears incorrect. Based on similar APIs like pdf-lib, you would typically call copyPages on the destination document, passing the source document as an argument. The line should likely be await newPdf.copyPages(pdf, [0, 1]); to copy pages from pdf into newPdf.

Suggested change
const [page1, page2] = await pdf.copyPages(pdf, [0, 1]);
const [page1, page2] = await newPdf.copyPages(pdf, [0, 1]);

Comment on lines 125 to 131
const pdf = await PDF.load(bytes);
const signer = await P12Signer.create(p12Bytes, 'password');

const signed = await pdf.sign({
signer,
reason: 'I approve this document',
});

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medium

The 'Sign a Document' example is incomplete and potentially incorrect.

  1. The p12Bytes variable is used without being defined. It should be loaded, for example, from a file using fs.readFile.
  2. The pdf.sign() method likely returns an object containing the signed bytes (e.g., { bytes }), which needs to be destructured. The current code const signed = await pdf.sign(...) may not capture the output correctly.

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�[0;35m[MONITOR]�[0m Code Review Monitoring Report

�[0;34m[INFO]�[0m Latest Quality Status:
SonarCloud: 0 bugs, 0 vulnerabilities, 447 code smells

�[0;34m[INFO]�[0m Recent monitoring activity:
Sun Jan 25 00:51:06 UTC 2026: Code review monitoring started
Sun Jan 25 00:51:07 UTC 2026: SonarCloud - Bugs: 0, Vulnerabilities: 0, Code Smells: 447
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  • CODE SMELLS: 447
  • VULNERABILITIES: 0

Generated on: Sun Jan 25 00:52:30 UTC 2026


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�[0;35m[MONITOR]�[0m Code Review Monitoring Report

�[0;34m[INFO]�[0m Latest Quality Status:
SonarCloud: 0 bugs, 0 vulnerabilities, 447 code smells

�[0;34m[INFO]�[0m Recent monitoring activity:
Sun Jan 25 00:52:34 UTC 2026: Code review monitoring started
Sun Jan 25 00:52:34 UTC 2026: SonarCloud - Bugs: 0, Vulnerabilities: 0, Code Smells: 447
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  • CODE SMELLS: 447
  • VULNERABILITIES: 0

Generated on: Sun Jan 25 00:53:58 UTC 2026


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augmentcode bot commented Jan 25, 2026

🤖 Augment PR Summary

Summary: Introduces a new PDF tooling area for the aidevops agent framework, centered on LibPDF integration for form filling and digital signatures.

Changes:

  • Added .agent/tools/pdf/ documentation: an overview/selection guide plus a detailed libpdf.md reference.
  • Added .agent/scripts/pdf-helper.sh CLI helper to run common PDF operations via Node/Bun and @libpdf/core (info, fields, fill, merge, text, install).
  • Extended the .agent/subagent-index.toon registry to include the new PDF tools entry and the new helper script.

Technical Notes: The helper script shells out to inline ESM JavaScript (node --input-type=module) and expects @libpdf/core to be available; documentation aims to establish an extensible pattern for adding future PDF tools.

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Review completed. 8 suggestions posted.

Fix All in Augment

Comment augment review to trigger a new review at any time.

# fields <file> - List form field names and types
# fill <file> <json> - Fill form fields from JSON
# merge <output> <files..> - Merge multiple PDFs
# extract <file> <pages> - Extract pages (e.g., "1-3,5,7-9")
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The header comment advertises an extract command, but there’s no extract implementation (and it’s not listed in cmd_help / main()), so users will hit “Unknown command”. Consider removing it from the header or adding the command handler.

Fix This in Augment

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fi

# Try to import
if $runtime -e "require('@libpdf/core')" 2>/dev/null; then
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check_libpdf uses require('@libpdf/core') to test availability; since @libpdf/core is ESM (type: "module"), this will fail under Node and can falsely report “not found” (especially for non-local installs). Consider checking via ESM import() (matching run_script’s module mode).

Fix This in Augment

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const bytes = readFileSync('$file');
const pdf = await PDF.load(bytes);
const pages = await pdf.getPages();
const form = await pdf.getForm();
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LibPDF pdf.getForm() returns PDFForm | null; form.getFieldNames() will throw for PDFs without an AcroForm. Consider guarding for null/empty forms here (and in other commands that call getForm()).

Other Locations
  • .agent/scripts/pdf-helper.sh:122
  • .agent/scripts/pdf-helper.sh:157

Fix This in Augment

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console.log('Form fields:', fields.length);

if (pages.length > 0) {
const { width, height } = pages[0].getSize();
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pages[0].getSize() doesn’t match the LibPDF PDFPage API (which exposes page.width/page.height), so info may crash on valid PDFs. Consider switching to the supported page dimension properties.

Fix This in Augment

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check_libpdf || return 1

local files_json
files_json=$(printf '%s\n' "${files[@]}" | jq -R . | jq -s .)
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cmd_merge depends on jq, but the script doesn’t check for it; with set -e, a missing jq will abort with a confusing error. Consider adding a preflight check with a clearer message.

Fix This in Augment

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const pages = await pdf.getPages();

for (let i = 0; i < pages.length; i++) {
const text = await pages[i].getTextContent();
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LibPDF PDFPage exposes extractText(); getTextContent() is likely not a method, so text may fail at runtime. Consider aligning this with the LibPDF API used elsewhere.

Other Locations
  • .agent/tools/pdf/libpdf.md:346

Fix This in Augment

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// Copy pages to new document
const newPdf = PDF.create();
const [page1, page2] = await pdf.copyPages(pdf, [0, 1]);
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This example calls pdf.copyPages(...), but LibPDF’s API is copyPagesFrom(source, indices, options?) (per the PDF API docs). As written, the snippet is likely to mislead readers or fail if copied verbatim.

Fix This in Augment

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### Encrypt on Save

```typescript
const output = await pdf.save({
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The “Encrypt on Save” snippet uses pdf.save({ userPassword, ownerPassword, permissions, ... }), but LibPDF applies encryption via pdf.setProtection(...) and then save(). This section appears to document a non-existent save option.

Fix This in Augment

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- Fix command injection vulnerability by using environment variables
- Fix ESM import check for @libpdf/core detection
- Add jq dependency check for merge command
- Fix fs import statements in documentation examples
- Fix copyPages API usage in extract pages example
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🔍 Code Quality Report

�[0;35m[MONITOR]�[0m Code Review Monitoring Report

�[0;34m[INFO]�[0m Latest Quality Status:
SonarCloud: 0 bugs, 0 vulnerabilities, 447 code smells

�[0;34m[INFO]�[0m Recent monitoring activity:
Sun Jan 25 00:56:50 UTC 2026: Code review monitoring started
Sun Jan 25 00:56:51 UTC 2026: SonarCloud - Bugs: 0, Vulnerabilities: 0, Code Smells: 447
Sun Jan 25 00:56:51 UTC 2026: Qlty - 0 issues found, auto-formatting applied
Sun Jan 25 00:56:53 UTC 2026: Codacy analysis completed with auto-fixes

📈 Current Quality Metrics

  • BUGS: 0
  • CODE SMELLS: 447
  • VULNERABILITIES: 0

Generated on: Sun Jan 25 00:58:15 UTC 2026


Generated by AI DevOps Framework Code Review Monitoring

- Add --background/--bg flag for async execution (avoids MCP timeout)
- Add 'logs' command to view background loop output
- Fix tool detection: check OPENCODE env var before CLAUDE_CODE
- Update cancel to kill background process if running
- Update documentation with background mode examples

Fixes timeout issue when running full-loop via MCP Bash tool.
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🔍 Code Quality Report

�[0;35m[MONITOR]�[0m Code Review Monitoring Report

�[0;34m[INFO]�[0m Latest Quality Status:
SonarCloud: 0 bugs, 0 vulnerabilities, 447 code smells

�[0;34m[INFO]�[0m Recent monitoring activity:
Sun Jan 25 01:13:49 UTC 2026: Code review monitoring started
Sun Jan 25 01:13:50 UTC 2026: SonarCloud - Bugs: 0, Vulnerabilities: 0, Code Smells: 447
Sun Jan 25 01:13:50 UTC 2026: Qlty - 0 issues found, auto-formatting applied
Sun Jan 25 01:13:52 UTC 2026: Codacy analysis completed with auto-fixes

📈 Current Quality Metrics

  • BUGS: 0
  • CODE SMELLS: 447
  • VULNERABILITIES: 0

Generated on: Sun Jan 25 01:15:04 UTC 2026


Generated by AI DevOps Framework Code Review Monitoring

- Use page.width/height instead of page.getSize()
- Use page.extractText().text instead of page.getTextContent()
- Use pdf.getPages() (sync) instead of await pdf.getPages()
- Use copyPagesFrom() instead of copyPages()
- Handle null form in info/fields/fill commands
- Show filled/skipped fields in fill command output
- Remove undocumented 'extract' command from header
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🔍 Code Quality Report

�[0;35m[MONITOR]�[0m Code Review Monitoring Report

�[0;34m[INFO]�[0m Latest Quality Status:
SonarCloud: 0 bugs, 0 vulnerabilities, 447 code smells

�[0;34m[INFO]�[0m Recent monitoring activity:
Sun Jan 25 01:20:37 UTC 2026: Code review monitoring started
Sun Jan 25 01:20:38 UTC 2026: SonarCloud - Bugs: 0, Vulnerabilities: 0, Code Smells: 447
Sun Jan 25 01:20:38 UTC 2026: Qlty - 0 issues found, auto-formatting applied
Sun Jan 25 01:20:40 UTC 2026: Codacy analysis completed with auto-fixes

📈 Current Quality Metrics

  • BUGS: 0
  • CODE SMELLS: 447
  • VULNERABILITIES: 0

Generated on: Sun Jan 25 01:22:02 UTC 2026


Generated by AI DevOps Framework Code Review Monitoring

@marcusquinn marcusquinn merged commit 7834fa4 into main Jan 25, 2026
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