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Merged
merged 1 commit into from
Jul 25, 2023
Merged

Run make all #303

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Binary file modified project/excel/sssom_schema.xlsx
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1 change: 1 addition & 0 deletions project/graphql/sssom_schema.graphql
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Original file line number Diff line number Diff line change
Expand Up @@ -74,6 +74,7 @@ type MappingSet
objectSourceVersion: String
mappingProvider: Uri
mappingTool: String
mappingToolVersion: String
mappingDate: Date
subjectMatchField: [EntityReference]
objectMatchField: [EntityReference]
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6 changes: 5 additions & 1 deletion project/jsonld/sssom_schema.context.jsonld
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@@ -1,5 +1,9 @@
{
"_comments": "Auto generated from sssom_schema.yaml by jsonldcontextgen.py version: 0.1.1\n Generation date: 2023-06-19T15:06:30\n Schema: sssom\n metamodel version: 1.7.0\n model version: None\n \n id: https://w3id.org/sssom/schema/\n description: Datamodel for Simple Standard for Sharing Ontological Mappings (SSSOM)\n license: https://creativecommons.org/publicdomain/zero/1.0/\n ",
"comments": {
"description": "Auto generated by LinkML jsonld context generator",
"generation_date": "2023-07-25T09:55:30",
"source": "sssom_schema.yaml"
},
"@context": {
"dc": "http://purl.org/dc/terms/",
"dcterms": "http://purl.org/dc/terms/",
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8 changes: 5 additions & 3 deletions project/jsonld/sssom_schema.jsonld
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Expand Up @@ -1399,6 +1399,7 @@
"slot_uri": "https://w3id.org/sssom/mapping_tool_version",
"owner": "Mapping",
"domain_of": [
"MappingSet",
"Mapping"
],
"range": "string",
Expand Down Expand Up @@ -1707,6 +1708,7 @@
"object_source_version",
"mapping_provider",
"mapping_tool",
"mapping_tool_version",
"mapping_date",
"subject_match_field",
"object_match_field",
Expand Down Expand Up @@ -1814,9 +1816,9 @@
],
"metamodel_version": "1.7.0",
"source_file": "sssom_schema.yaml",
"source_file_date": "2023-06-19T14:51:37",
"source_file_size": 25627,
"generation_date": "2023-06-19T15:06:31",
"source_file_date": "2023-07-25T09:52:38",
"source_file_size": 25654,
"generation_date": "2023-07-25T09:55:31",
"@type": "SchemaDefinition",
"@context": [
"project/jsonld/sssom_schema.context.jsonld",
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531 changes: 530 additions & 1 deletion project/jsonschema/sssom_schema.schema.json
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457 changes: 206 additions & 251 deletions project/owl/sssom_schema.owl.ttl
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1 change: 1 addition & 0 deletions project/protobuf/sssom_schema.proto
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Expand Up @@ -75,6 +75,7 @@ message MappingSet
string objectSourceVersion = 0
uri mappingProvider = 0
string mappingTool = 0
string mappingToolVersion = 0
date mappingDate = 0
repeated entityReference subjectMatchField = 0
repeated entityReference objectMatchField = 0
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387 changes: 196 additions & 191 deletions project/shacl/sssom_schema.shacl.ttl
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3 changes: 2 additions & 1 deletion project/shex/sssom_schema.shex
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@@ -1,11 +1,11 @@
BASE <https://w3id.org/sssom/>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX linkml: <https://w3id.org/linkml/>
PREFIX pav: <http://purl.org/pav/>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX dcterms: <http://purl.org/dc/terms/>


Expand Down Expand Up @@ -128,6 +128,7 @@ linkml:Sparqlpath xsd:string
<object_source_version> @linkml:String ? ;
<mapping_provider> @linkml:Uri ? ;
<mapping_tool> @linkml:String ? ;
<mapping_tool_version> @linkml:String ? ;
pav:authoredOn @linkml:Date ? ;
<subject_match_field> @<EntityReference> * ;
<object_match_field> @<EntityReference> * ;
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3 changes: 2 additions & 1 deletion project/sqlschema/sssom_schema.sql
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Expand Up @@ -75,6 +75,7 @@ CREATE TABLE mapping_set (
object_source_version TEXT,
mapping_provider TEXT,
mapping_tool TEXT,
mapping_tool_version TEXT,
mapping_date DATE,
subject_match_field TEXT,
object_match_field TEXT,
Expand All @@ -83,7 +84,7 @@ CREATE TABLE mapping_set (
see_also TEXT,
other TEXT,
comment TEXT,
PRIMARY KEY (mappings, mapping_set_id, mapping_set_version, mapping_set_source, mapping_set_title, mapping_set_description, creator_id, creator_label, license, subject_type, subject_source, subject_source_version, object_type, object_source, object_source_version, mapping_provider, mapping_tool, mapping_date, subject_match_field, object_match_field, subject_preprocessing, object_preprocessing, see_also, other, comment)
PRIMARY KEY (mappings, mapping_set_id, mapping_set_version, mapping_set_source, mapping_set_title, mapping_set_description, creator_id, creator_label, license, subject_type, subject_source, subject_source_version, object_type, object_source, object_source_version, mapping_provider, mapping_tool, mapping_tool_version, mapping_date, subject_match_field, object_match_field, subject_preprocessing, object_preprocessing, see_also, other, comment)
);

CREATE TABLE mapping_set_reference (
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6 changes: 5 additions & 1 deletion src/sssom_schema/context/sssom_schema.context.jsonld
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@@ -1,5 +1,9 @@
{
"_comments": "Auto generated from sssom_schema.yaml by jsonldcontextgen.py version: 0.1.1\n Generation date: 2023-06-19T15:06:30\n Schema: sssom\n metamodel version: 1.7.0\n model version: None\n \n id: https://w3id.org/sssom/schema/\n description: Datamodel for Simple Standard for Sharing Ontological Mappings (SSSOM)\n license: https://creativecommons.org/publicdomain/zero/1.0/\n ",
"comments": {
"description": "Auto generated by LinkML jsonld context generator",
"generation_date": "2023-07-25T09:55:30",
"source": "sssom_schema.yaml"
},
"@context": {
"dc": "http://purl.org/dc/terms/",
"dcterms": "http://purl.org/dc/terms/",
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8 changes: 5 additions & 3 deletions src/sssom_schema/context/sssom_schema.jsonld
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Expand Up @@ -1399,6 +1399,7 @@
"slot_uri": "https://w3id.org/sssom/mapping_tool_version",
"owner": "Mapping",
"domain_of": [
"MappingSet",
"Mapping"
],
"range": "string",
Expand Down Expand Up @@ -1707,6 +1708,7 @@
"object_source_version",
"mapping_provider",
"mapping_tool",
"mapping_tool_version",
"mapping_date",
"subject_match_field",
"object_match_field",
Expand Down Expand Up @@ -1814,9 +1816,9 @@
],
"metamodel_version": "1.7.0",
"source_file": "sssom_schema.yaml",
"source_file_date": "2023-06-19T14:51:37",
"source_file_size": 25627,
"generation_date": "2023-06-19T15:06:31",
"source_file_date": "2023-07-25T09:52:38",
"source_file_size": 25654,
"generation_date": "2023-07-25T09:55:31",
"@type": "SchemaDefinition",
"@context": [
"project/jsonld/sssom_schema.context.jsonld",
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6 changes: 5 additions & 1 deletion src/sssom_schema/datamodel/sssom_schema.py
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@@ -1,5 +1,5 @@
# Auto generated from sssom_schema.yaml by pythongen.py version: 0.9.0
# Generation date: 2023-06-19T15:06:37
# Generation date: 2023-07-25T09:55:38
# Schema: sssom
#
# id: https://w3id.org/sssom/schema/
Expand Down Expand Up @@ -89,6 +89,7 @@ class MappingSet(YAMLRoot):
object_source_version: Optional[str] = None
mapping_provider: Optional[Union[str, URI]] = None
mapping_tool: Optional[str] = None
mapping_tool_version: Optional[str] = None
mapping_date: Optional[Union[str, XSDDate]] = None
subject_match_field: Optional[Union[Union[str, EntityReference], List[Union[str, EntityReference]]]] = empty_list()
object_match_field: Optional[Union[Union[str, EntityReference], List[Union[str, EntityReference]]]] = empty_list()
Expand Down Expand Up @@ -158,6 +159,9 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
if self.mapping_tool is not None and not isinstance(self.mapping_tool, str):
self.mapping_tool = str(self.mapping_tool)

if self.mapping_tool_version is not None and not isinstance(self.mapping_tool_version, str):
self.mapping_tool_version = str(self.mapping_tool_version)

if self.mapping_date is not None and not isinstance(self.mapping_date, XSDDate):
self.mapping_date = XSDDate(self.mapping_date)

Expand Down