Error: Conflict (HTTP 409). Failed to activate repo on Travis CI #143

moldach · 2019-12-16T20:13:17Z

I'm getting an error from the default create_package_project():

library(starters)
> create_package_project(name = "networkanalyst", title = "A visual analytics platform for comprehensive gene expression profiling & meta-analysis")
✔ Creating '/home/tsundoku/RProjects/networkanalyst/'
✔ Setting active project to '/home/tsundoku/RProjects/networkanalyst'
✔ Creating 'R/'
✔ Writing 'DESCRIPTION'
Package: networkanalyst
Title: What the Package Does (One Line, Title Case)
Version: 0.0.0.9000
Authors@R (parsed):
    * Matthew Oldach <[email protected]> [aut, cre]
Description: What the package does (one paragraph).
License: MIT + file LICENSE
Encoding: UTF-8
Language: es
LazyData: true
✔ Writing 'NAMESPACE'
✔ Writing 'networkanalyst.Rproj'
✔ Adding '.Rproj.user' to '.gitignore'
✔ Adding '^networkanalyst\\.Rproj$', '^\\.Rproj\\.user$' to '.Rbuildignore'
✔ Setting active project to '<no active project>'
✔ Setting active project to '/home/tsundoku/RProjects/networkanalyst'
✔ Writing 'CODE_OF_CONDUCT.md'
✔ Adding '^CODE_OF_CONDUCT\\.md$' to '.Rbuildignore'
● Don't forget to describe the code of conduct in your README:
  Please note that the 'networkanalyst' project is released with a
  [Contributor Code of Conduct](CODE_OF_CONDUCT.md).
  By contributing to this project, you agree to abide by its terms.
  [Copied to clipboard]
✔ Writing 'LICENSE.md'
✔ Adding '^LICENSE\\.md$' to '.Rbuildignore'
✔ Writing 'LICENSE'
✔ Writing 'R/networkanalyst-package.R'
✔ Writing 'README.Rmd'
✔ Adding '^README\\.Rmd$' to '.Rbuildignore'
✔ Adding Project Status: WIP - Initial development is in progress, but there has not yet been a stable, usable release suitable for the public. badge to 'README.Rmd'
● Re-knit 'README.Rmd'
✔ Adding 'testthat' to Suggests field in DESCRIPTION
✔ Creating 'tests/testthat/'
✔ Writing 'tests/testthat.R'
● Call `use_test()` to initialize a basic test file and open it for editing.
✔ Adding 'knitr' to Suggests field in DESCRIPTION
✔ Setting VignetteBuilder field in DESCRIPTION to 'knitr'
✔ Adding 'inst/doc' to '.gitignore'
✔ Creating 'vignettes/'
✔ Adding '*.html', '*.R' to 'vignettes/.gitignore'
✔ Adding 'rmarkdown' to Suggests field in DESCRIPTION
✔ Writing 'vignettes/networkanalyst.Rmd'
● Modify 'vignettes/networkanalyst.Rmd'
✔ Initialising Git repo
✔ Adding '.Rhistory', '.RData' to '.gitignore'
There are 12 uncommitted files:
* '.gitignore'
* '.Rbuildignore'
* 'CODE_OF_CONDUCT.md'
* 'DESCRIPTION'
* 'LICENSE'
* 'LICENSE.md'
* 'NAMESPACE'
* 'networkanalyst.Rproj'
* 'R/'
* 'README.Rmd'
* 'tests/'
* 'vignettes/'
Is it ok to commit them?

1: Not now
2: Definitely
3: Absolutely not

Selection: 2
✔ Adding files
✔ Commit with message 'First commit of this amazing project, yee-haw!'
✔ Adding 'styler' to Suggests field in DESCRIPTION
● Use `requireNamespace("styler", quietly = TRUE)` to test if package is installed
● Then directly refer to functons like `styler::fun()` (replacing `fun()`).
✔ Writing 'NEWS.md'
✔ Adding '^_pkgdown\\.yml$' to '.Rbuildignore'
Trying to create GitHub repo, try 1
✔ Adding Codecov test coverage badge to 'README.Rmd'
● Re-knit 'README.Rmd'
✔ Writing '.travis.yml'
✔ Adding '^\\.travis\\.yml$' to '.Rbuildignore'
Finished initiating sync with GitHub.
Waiting for sync with GitHub.
Finished sync with GitHub.
Error: Conflict (HTTP 409). Failed to activate repo moldach/networkanalyst on Travis CI.
Oops! An error was found and the `networkanalyst` directory was deleted
✔ Setting active project to '<no active project>'

If I try setting ci_activation = NULL I get another error:

> create_package_project(name = "testRepo7777", external_setup = list(ci_activation = NULL))
✔ Creating '/home/tsundoku/RProjects/testRepo7777/'
✔ Setting active project to '/home/tsundoku/RProjects/testRepo7777'
✔ Creating 'R/'
✔ Writing 'DESCRIPTION'
Package: testRepo7777
Title: What the Package Does (One Line, Title Case)
Version: 0.0.0.9000
Authors@R (parsed):
    * Matthew Oldach <[email protected]> [aut, cre]
Description: What the package does (one paragraph).
License: MIT + file LICENSE
Encoding: UTF-8
Language: es
LazyData: true
✔ Writing 'NAMESPACE'
✔ Writing 'testRepo7777.Rproj'
✔ Adding '.Rproj.user' to '.gitignore'
✔ Adding '^testRepo7777\\.Rproj$', '^\\.Rproj\\.user$' to '.Rbuildignore'
✔ Setting active project to '<no active project>'
✔ Setting active project to '/home/tsundoku/RProjects/testRepo7777'
✔ Writing 'CODE_OF_CONDUCT.md'
✔ Adding '^CODE_OF_CONDUCT\\.md$' to '.Rbuildignore'
● Don't forget to describe the code of conduct in your README:
  Please note that the 'testRepo7777' project is released with a
  [Contributor Code of Conduct](CODE_OF_CONDUCT.md).
  By contributing to this project, you agree to abide by its terms.
  [Copied to clipboard]
✔ Writing 'LICENSE.md'
✔ Adding '^LICENSE\\.md$' to '.Rbuildignore'
✔ Writing 'LICENSE'
✔ Writing 'R/testRepo7777-package.R'
✔ Writing 'README.Rmd'
✔ Adding '^README\\.Rmd$' to '.Rbuildignore'
✔ Adding Project Status: WIP - Initial development is in progress, but there has not yet been a stable, usable release suitable for the public. badge to 'README.Rmd'
● Re-knit 'README.Rmd'
✔ Adding 'testthat' to Suggests field in DESCRIPTION
✔ Creating 'tests/testthat/'
✔ Writing 'tests/testthat.R'
● Call `use_test()` to initialize a basic test file and open it for editing.
✔ Adding 'knitr' to Suggests field in DESCRIPTION
✔ Setting VignetteBuilder field in DESCRIPTION to 'knitr'
✔ Adding 'inst/doc' to '.gitignore'
✔ Creating 'vignettes/'
✔ Adding '*.html', '*.R' to 'vignettes/.gitignore'
✔ Adding 'rmarkdown' to Suggests field in DESCRIPTION
✔ Writing 'vignettes/testRepo7777.Rmd'
● Modify 'vignettes/testRepo7777.Rmd'
✔ Initialising Git repo
✔ Adding '.Rhistory', '.RData' to '.gitignore'
There are 12 uncommitted files:
* '.gitignore'
* '.Rbuildignore'
* 'CODE_OF_CONDUCT.md'
* 'DESCRIPTION'
* 'LICENSE'
* 'LICENSE.md'
* 'NAMESPACE'
* 'R/'
* 'README.Rmd'
* 'testRepo7777.Rproj'
* 'tests/'
* 'vignettes/'
Is it ok to commit them?

1: Yeah
2: Absolutely not
3: Nope

Selection: 1
✔ Adding files
✔ Commit with message 'First commit of this primo project, yay!'
✔ Adding 'styler' to Suggests field in DESCRIPTION
● Use `requireNamespace("styler", quietly = TRUE)` to test if package is installed
● Then directly refer to functons like `styler::fun()` (replacing `fun()`).
✔ Writing 'NEWS.md'
✔ Adding '^_pkgdown\\.yml$' to '.Rbuildignore'
Error: argument is of length zero
Oops! An error was found and the `testRepo7777` directory was deleted
✔ Setting active project to '<no active project>'

It work's if I don't include a title = though....

> create_package_project(name = "testRepo686868")
✔ Creating '/home/tsundoku/RProjects/testRepo686868/'
✔ Setting active project to '/home/tsundoku/RProjects/testRepo686868'
✔ Creating 'R/'
✔ Writing 'DESCRIPTION'
Package: testRepo686868
Title: What the Package Does (One Line, Title Case)
Version: 0.0.0.9000
Authors@R (parsed):
    * Matthew Oldach <[email protected]> [aut, cre]
Description: What the package does (one paragraph).
License: MIT + file LICENSE
Encoding: UTF-8
Language: es
LazyData: true
✔ Writing 'NAMESPACE'
✔ Writing 'testRepo686868.Rproj'
✔ Adding '.Rproj.user' to '.gitignore'
✔ Adding '^testRepo686868\\.Rproj$', '^\\.Rproj\\.user$' to '.Rbuildignore'
✔ Setting active project to '<no active project>'
✔ Setting active project to '/home/tsundoku/RProjects/testRepo686868'
✔ Writing 'CODE_OF_CONDUCT.md'
✔ Adding '^CODE_OF_CONDUCT\\.md$' to '.Rbuildignore'
● Don't forget to describe the code of conduct in your README:
  Please note that the 'testRepo686868' project is released with a
  [Contributor Code of Conduct](CODE_OF_CONDUCT.md).
  By contributing to this project, you agree to abide by its terms.
  [Copied to clipboard]
✔ Writing 'LICENSE.md'
✔ Adding '^LICENSE\\.md$' to '.Rbuildignore'
✔ Writing 'LICENSE'
✔ Writing 'R/testRepo686868-package.R'
✔ Writing 'README.Rmd'
✔ Adding '^README\\.Rmd$' to '.Rbuildignore'
✔ Adding Project Status: WIP - Initial development is in progress, but there has not yet been a stable, usable release suitable for the public. badge to 'README.Rmd'
● Re-knit 'README.Rmd'
✔ Adding 'testthat' to Suggests field in DESCRIPTION
✔ Creating 'tests/testthat/'
✔ Writing 'tests/testthat.R'
● Call `use_test()` to initialize a basic test file and open it for editing.
✔ Adding 'knitr' to Suggests field in DESCRIPTION
✔ Setting VignetteBuilder field in DESCRIPTION to 'knitr'
✔ Adding 'inst/doc' to '.gitignore'
✔ Creating 'vignettes/'
✔ Adding '*.html', '*.R' to 'vignettes/.gitignore'
✔ Adding 'rmarkdown' to Suggests field in DESCRIPTION
✔ Writing 'vignettes/testRepo686868.Rmd'
● Modify 'vignettes/testRepo686868.Rmd'
✔ Initialising Git repo
✔ Adding '.Rhistory', '.RData' to '.gitignore'
There are 12 uncommitted files:
* '.gitignore'
* '.Rbuildignore'
* 'CODE_OF_CONDUCT.md'
* 'DESCRIPTION'
* 'LICENSE'
* 'LICENSE.md'
* 'NAMESPACE'
* 'R/'
* 'README.Rmd'
* 'testRepo686868.Rproj'
* 'tests/'
* 'vignettes/'
Is it ok to commit them?

1: Absolutely
2: No
3: Absolutely not

Selection: 1
✔ Adding files
✔ Commit with message 'First commit of this top-notch project, gee!'
✔ Adding 'styler' to Suggests field in DESCRIPTION
● Use `requireNamespace("styler", quietly = TRUE)` to test if package is installed
● Then directly refer to functons like `styler::fun()` (replacing `fun()`).
✔ Writing 'NEWS.md'
✔ Adding '^_pkgdown\\.yml$' to '.Rbuildignore'
Trying to create GitHub repo, try 1
✔ Adding Codecov test coverage badge to 'README.Rmd'
● Re-knit 'README.Rmd'
✔ Writing '.travis.yml'
✔ Adding '^\\.travis\\.yml$' to '.Rbuildignore'
>  Authenticating to GitHub.
Waiting for authentication in browser...
Press Esc/Ctrl + C to abort
Authentication complete.
✓ Authentication successful.
>  Authenticating to GitHub.
>  Authenticating to GitHub.
Waiting for authentication in browser...
Press Esc/Ctrl + C to abort
Authentication complete.
✓ Authentication successful.
Finished initiating sync with GitHub.
Waiting for sync with GitHub..
Finished sync with GitHub.
Finished activating repo moldach/testRepo686868 on Travis CI.
✔ Writing 'tic.R'
✔ Adding '^tic\\.R$' to '.Rbuildignore'
>  Authenticating to GitHub.
Waiting for authentication in browser...
Press Esc/Ctrl + C to abort
Authentication complete.
✓ Authentication successful.
Finished adding deploy keys on GitHub for repo moldach/testRepo686868.
✓ Successfully added public deploy key travis+tic' to GitHub for moldach/testRepo686868. 
>  You should receive a confirmation e-mail from GitHub.
>  Delete the key in the repository's settings to revoke access for that key or when you no longer need it.
Finished adding private environment variable id_rsa to moldach/testRepo686868 on Travis CI.
✓ Successfully added private deploy key to moldach/testRepo686868 as secure environment variable id_rsa to Travis CI.
>  Creating a personal access token (PAT).
>  The suggested description 'travis+tic for moldach/testRepo686868' has been copied to the clipboard.travis+tic for moldach/testRepo686868
ℹ  If you use this token only to avoid GitHub's rate limit, you can leave all scopes unchecked.
ℹ  Then, copy the new token to the clipboard, it will be detected and applied automatically.
ℹ Please visit
  https://github.com/settings/tokens/new
  A browser window will be opened.
ℹ  If you use this token only to avoid GitHub's rate limit, you can leave all scopes unchecked.
ℹ  Waiting for PAT to appear on the clipboard.
>  Detected PAT, clearing clipboard.
Finished adding private environment variable GITHUB_PAT to moldach/testRepo686868 on Travis CI.
✔ Adding Travis build status badge to 'README.Rmd'
● Re-knit 'README.Rmd'
● Call `use_test()` to initialize a basic test file and open it for editing.
✔ Increasing 'testthat' version to '>= 2.1.0' in DESCRIPTION
✔ Writing 'tests/testthat/test-sample.R'
✔ Setting active project to '<no active project>'

Weird... now all of a sudden I can no longer reproduce the above....

> create_package_project(name = "IHateMonday")
✔ Creating '/home/tsundoku/RProjects/IHateMonday/'
✔ Setting active project to '/home/tsundoku/RProjects/IHateMonday'
✔ Creating 'R/'
✔ Setting active project to '<no active project>'
Error: subscript out of bounds
Oops! An error was found and the `IHateMonday` directory was deleted
✔ Setting active project to '<no active project>'

And everything from starters::start_here() looks okay:

> starters::start_here()
Checking GitHub account can be guessed...
✔ Your GitHub username is moldach.
Checking git is installed...
✔ git seems to be installed!
Checking gitconfig...
✔ gitconfig is already set!
Checking GITHUB_PAT...
✔ GITHUB_PAT is already set!
Checking default description values...
✔ DESCRIPTION defaults are already set!
Checking build tools are available...
✔ Build tools are available!
✔ All set now!

Here's my sessionInfo():

R version 3.6.2 (2019-12-12)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.3 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1

locale:
 [1] LC_CTYPE=en_CA.UTF-8       LC_NUMERIC=C               LC_TIME=en_CA.UTF-8        LC_COLLATE=en_CA.UTF-8     LC_MONETARY=en_CA.UTF-8   
 [6] LC_MESSAGES=en_CA.UTF-8    LC_PAPER=en_CA.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] starters_0.0.2 BRRR_1.2      

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.3         pillar_1.4.2       compiler_3.6.2     git2r_0.26.1       prettyunits_1.0.2  tools_3.6.2        pkgbuild_1.0.6     testthat_2.3.1    
 [9] digest_0.6.23      tibble_2.1.3       jsonlite_1.6       praise_1.0.0       memoise_1.1.0.9000 evaluate_0.14      pkgconfig_2.0.3    rlang_0.4.2       
[17] cli_2.0.0          whoami_1.3.0       rstudioapi_0.10    curl_4.3           parallel_3.6.2     xfun_0.11          stringr_1.4.0      httr_1.4.1        
[25] styler_1.2.0       knitr_1.26         desc_1.2.0         fs_1.3.1           rprojroot_1.3-2    glue_1.3.1         R6_2.4.1           processx_3.4.1    
[33] gh_1.0.1           fansi_0.4.0        rmarkdown_2.0      callr_3.4.0        purrr_0.3.3        clipr_0.7.0        magrittr_1.5       whisker_0.4       
[41] ps_1.3.0           backports_1.1.5    clisymbols_1.2.0   htmltools_0.4.0    usethis_1.5.1      stringdist_0.9.5.5 assertthat_0.2.1   available_1.0.4   
[49] stringi_1.4.3      crayon_1.3.4       audio_0.1-6

The text was updated successfully, but these errors were encountered:

maelle · 2019-12-17T05:39:19Z

Thanks! There are a few fixes in #142 but nothing related to Travis though so I suppose we missed developments in tic/travis. 😬 There'll be a break in development over the holidays, sorry.

moldach · 2019-12-17T15:54:38Z

No problem, I'll just set it up manually this time. Thanks and happy holidays!

maelle · 2019-12-17T16:24:18Z

Thanks, happy holidays to you too!

maelle · 2020-01-06T09:34:22Z

One fix for

tmp <- tempfile(
  pattern = "hny",
  tempdir(check = TRUE)
)
fs::dir_create(tmp)

create_package_project(name = "starterstestrepo",
                       external_setup = list(ci_activation = NULL),
                       folder = tmp)

fs::dir_delete(tmp)

that does not create a GH repo, for that one needs something like

tmp <- tempfile(
  pattern = "hny",
  tempdir(check = TRUE)
)
fs::dir_create(tmp)

create_package_project(name = "starterstestrepo",
                       external_setup = list(
                         git_service = "GitHub",
                         login = gh::gh_whoami()$login,
                         private = TRUE,
                         protocol = "ssh",
                         ci_activation = NULL
                       ),
                       folder = tmp)

fs::dir_delete(tmp)

maelle · 2020-01-06T10:29:47Z

The http error stems from https://docs.ropensci.org/travis/articles/travis.html -- one needs to set up an API key. I've now set it up but I'm guessing other parts of the tic/travis code will need to be updated.

maelle · 2020-01-06T10:55:14Z

@moldach the next step for starters will actually be #144 (I'll work on that next week at the earliest)

In the meantime, having ci_activation set to NULL is better.

Sorry and thanks again for the bug report!

maelle pinned this issue Dec 17, 2019

maelle added a commit that referenced this issue Jan 6, 2020

a first fix cf #143

6676bc0

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Error: Conflict (HTTP 409). Failed to activate repo on Travis CI #143

Error: Conflict (HTTP 409). Failed to activate repo on Travis CI #143

moldach commented Dec 16, 2019 •

edited

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maelle commented Dec 17, 2019

moldach commented Dec 17, 2019

maelle commented Dec 17, 2019

maelle commented Jan 6, 2020

maelle commented Jan 6, 2020

maelle commented Jan 6, 2020

Error: Conflict (HTTP 409). Failed to activate repo on Travis CI #143

Error: Conflict (HTTP 409). Failed to activate repo on Travis CI #143

Comments

moldach commented Dec 16, 2019 • edited Loading

maelle commented Dec 17, 2019

moldach commented Dec 17, 2019

maelle commented Dec 17, 2019

maelle commented Jan 6, 2020

maelle commented Jan 6, 2020

maelle commented Jan 6, 2020

moldach commented Dec 16, 2019 •

edited

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