chore(pre-commit.ci): pre-commit autoupdate #61

pre-commit-ci · 2025-08-25T17:51:51Z

updates:

liblaf · 2025-08-25T17:53:43Z

✅⚠️MegaLinter analysis: Success with warnings

Descriptor	Linter	Files	Fixed	Errors	Warnings	Elapsed time
⚠️ COPYPASTE	jscpd	yes		23	no	3.54s
⚠️ JSON	prettier	29	0	1	0	0.58s
✅ JSON	v8r	29		0	0	8.04s
✅ PYTHON	ruff	yes	yes	no	no	0.34s
✅ REPOSITORY	git_diff	yes		no	no	0.27s
✅ SPELL	cspell	205		0	0	6.6s
✅ YAML	prettier	4	0	0	0	0.73s
✅ YAML	v8r	4		0	0	6.28s
✅ YAML	yamllint	4		0	0	0.4s

Detailed Issues

⚠️ COPYPASTE / jscpd - 23 errors

Clone found (python):
 - src/liblaf/melon/io/paraview/series/_shared.py [6:1 - 18:2] (12 lines, 104 tokens)
   src/liblaf/melon/io/paraview/series/_writer.py [16:1 - 28:2]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py [31:5 - 36:6] (5 lines, 81 tokens)
   exp/2025/04/30/human-head-anatomy/src/34-muscles.py [38:5 - 43:6]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py [80:7 - 86:15] (6 lines, 82 tokens)
   exp/2025/04/30/human-head-anatomy/src/34-muscles.py [99:11 - 105:23]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py [13:30 - 21:14] (8 lines, 77 tokens)
   exp/2025/10/29/fiber-direction/src/10-holes.py [14:17 - 22:8]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/31-gen-masks.py [17:15 - 24:5] (7 lines, 76 tokens)
   exp/2025/10/29/fiber-direction/src/10-holes.py [14:17 - 22:8]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/20-muscle-fix.py [6:1 - 15:7] (9 lines, 82 tokens)
   exp/2025/04/30/human-head-anatomy/src/31-gen-masks.py [7:1 - 15:8]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/20-muscle-fix.py [15:17 - 22:5] (7 lines, 76 tokens)
   exp/2025/10/29/fiber-direction/src/10-holes.py [14:17 - 22:8]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/15-find-jaw-pivot.py [1:1 - 12:17] (11 lines, 88 tokens)
   exp/2025/10/29/fiber-direction/src/10-holes.py [1:1 - 12:17]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/14-register-cranium.py [18:7 - 34:2] (16 lines, 155 tokens)
   exp/2025/04/30/human-head-anatomy/src/14-register-mandible.py [19:5 - 35:2]

Clone found (python):
 - src/liblaf/melon/tri/_wrapping.py [24:5 - 31:5] (7 lines, 96 tokens)
   src/liblaf/melon/ext/wrap/_fast_wrapping.py [20:5 - 27:17]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_point.py [61:1 - 74:2] (13 lines, 142 tokens)
   src/liblaf/melon/transfer/_tri_point_to_tet.py [36:1 - 49:2]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_cell_to_point_category.py [18:36 - 27:7] (9 lines, 108 tokens)
   src/liblaf/melon/transfer/_tri_point.py [20:19 - 29:7]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_cell_to_point_category.py [28:2 - 37:7] (9 lines, 136 tokens)
   src/liblaf/melon/transfer/_tri_point.py [29:7 - 38:7]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_cell_to_point_category.py [56:10 - 65:2] (9 lines, 85 tokens)
   src/liblaf/melon/transfer/_tri_point_to_tet.py [40:11 - 49:2]

Clone found (python):
 - src/liblaf/melon/proximity/_nearest_point_on_surface.py [73:2 - 81:55] (8 lines, 168 tokens)
   src/liblaf/melon/proximity/_nearest_point_on_surface.py [48:7 - 55:33]

Clone found (python):
 - src/liblaf/melon/proximity/_nearest_point_on_surface.py [90:13 - 102:7] (12 lines, 87 tokens)
   src/liblaf/melon/proximity/_nearest_point_on_surface.py [57:7 - 68:4]

Clone found (python):
 - src/liblaf/melon/proximity/_nearest_point_on_surface.py [177:17 - 189:12] (12 lines, 146 tokens)
   src/liblaf/melon/proximity/_nearest_point_on_surface.py [146:19 - 158:8]

Clone found (python):
 - src/liblaf/melon/proximity/_nearest_point_on_surface.py [195:17 - 205:5] (10 lines, 140 tokens)
   src/liblaf/melon/proximity/_nearest_point_on_surface.py [157:7 - 169:4]

Clone found (python):
 - scripts/bench-contains.py [28:5 - 33:2] (5 lines, 76 tokens)
   src/liblaf/melon/tri/_contains.py [64:5 - 69:2]

Clone found (python):
 - scripts/bench-contains.py [54:5 - 63:2] (9 lines, 129 tokens)
   scripts/bench-on-surface.py [96:5 - 105:2]

Clone found (python):
 - scripts/bench-contains.py [63:2 - 74:5] (11 lines, 161 tokens)
   scripts/bench-on-surface.py [105:2 - 116:17]

Clone found (python):
 - scripts/bench-cell-neighbors.py [29:2 - 40:9] (11 lines, 156 tokens)
   tests/_src/graph/test_cell_neighbors.py [8:23 - 20:4]

Clone found (python):
 - scripts/bench-cell-neighbors.py [56:7 - 65:8] (9 lines, 136 tokens)
   src/liblaf/melon/_src/graph.py [25:7 - 35:11]

┌────────┬────────────────┬─────────────┬──────────────┬──────────────┬──────────────────┬───────────────────┐
│ Format │ Files analyzed │ Total lines │ Total tokens │ Clones found │ Duplicated lines │ Duplicated tokens │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ python │ 132            │ 4325        │ 44079        │ 23           │ 215 (4.97%)      │ 2587 (5.87%)      │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ bash   │ 9              │ 212         │ 1345         │ 0            │ 0 (0%)           │ 0 (0%)            │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ Total: │ 141            │ 4537        │ 45424        │ 23           │ 215 (4.74%)      │ 2587 (5.7%)       │
└────────┴────────────────┴─────────────┴──────────────┴──────────────┴──────────────────┴───────────────────┘
Found 23 clones.
HTML report saved to megalinter-reports/copy-paste/html/
ERROR: jscpd found too many duplicates (4.74%) over threshold (0%)
Error: ERROR: jscpd found too many duplicates (4.74%) over threshold (0%)
    at ThresholdReporter.report (/node-deps/node_modules/@jscpd/finder/dist/index.js:612:13)
    at /node-deps/node_modules/@jscpd/finder/dist/index.js:110:18
    at Array.forEach (<anonymous>)
    at /node-deps/node_modules/@jscpd/finder/dist/index.js:109:22
    at async /node-deps/node_modules/jscpd/dist/jscpd.js:351:5

⚠️ JSON / prettier - 1 error

.config/linters/pyrightconfig.json 50ms (unchanged)
.config/release-please/config.json 15ms (unchanged)
.github/renovate.json 1ms (unchanged)
.vscode/settings.json 8ms (unchanged)
[error] exp/2025/04/30/human-head-anatomy/data/00-XYZ_ReadyToSculpt_eyesOpen_PolyGroups_GEO.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:74cac07560a0ac93e15b334d49841c637a59a44de0708f7aaf08cbcbf2e8f469
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/00-sculptor-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:766aedc9c892ef6cc830caffe266bcd28fb8fd00d9a144533e2c4739bb266cbd
[error]   3 | size 429
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/00-sculptor-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:f1e16d8631ac4cc730978f0422778d005ce78102daf535fdfe7b745259b86e3a
[error]   3 | size 476
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/XYZ_ReadyToSculpt_eyesOpen_PolyGroups_GEO.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:74cac07560a0ac93e15b334d49841c637a59a44de0708f7aaf08cbcbf2e8f469
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:766aedc9c892ef6cc830caffe266bcd28fb8fd00d9a144533e2c4739bb266cbd
[error]   3 | size 429
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/face.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:e458b1bb67aa33ac9db931cb0d6d6d685429cfb7d46417c1b333af46924ad85f
[error]   3 | size 800
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:f1e16d8631ac4cc730978f0422778d005ce78102daf535fdfe7b745259b86e3a
[error]   3 | size 476
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/skull.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:4df392ea2d66a5057ceefc7b5191760f6791e48bcfda3b55a3138f91f26989ff
[error]   3 | size 1215
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/11-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:018f3bce8052b47b9a953ec89a9703fdd68c16454ba3e8bd849aab4eb9b6da6d
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/12-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:018f3bce8052b47b9a953ec89a9703fdd68c16454ba3e8bd849aab4eb9b6da6d
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/13-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error]   3 | size 430
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/13-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error]   3 | size 474
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/14-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error]   3 | size 430
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/14-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error]   3 | size 474
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/skin-with-mouth-socket.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:5846defd42970713d2bcdd08b798fd2653346de4662129e1fffbe4521b41f1ad
[error]   3 | size 715
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:8a9430700a2b0e825304625d59107487f31f39c67421260dd9949f57b267ad3f
[error]   3 | size 804
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/11-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:e936620a71ec8780c4d65bea3697c6f9c90acb4dc0dbe3c4fda50a45b5cab147
[error]   3 | size 870
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/12-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:018f3bce8052b47b9a953ec89a9703fdd68c16454ba3e8bd849aab4eb9b6da6d
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/13-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error]   3 | size 430
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/13-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error]   3 | size 474
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/14-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error]   3 | size 430
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/14-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error]   3 | size 474
[error]   4 |
pyrightconfig.json 1ms (unchanged)
tmp.6NE8UxMvCk/linters/pyrightconfig.json 2ms (unchanged)
tmp.6NE8UxMvCk/renovate-config.json 2ms (unchanged)

See detailed reports in MegaLinter artifacts

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updates: - [github.com/astral-sh/ruff-pre-commit: v0.14.2 → v0.14.7](astral-sh/ruff-pre-commit@v0.14.2...v0.14.7) - [github.com/biomejs/pre-commit: v2.3.1 → v2.3.8](biomejs/pre-commit@v2.3.1...v2.3.8)

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chore(ci): pre-commit autoupdate

0e1b628

updates: - [github.com/astral-sh/ruff-pre-commit: v0.14.2 → v0.14.7](astral-sh/ruff-pre-commit@v0.14.2...v0.14.7) - [github.com/biomejs/pre-commit: v2.3.1 → v2.3.8](biomejs/pre-commit@v2.3.1...v2.3.8)

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chore(pre-commit.ci): pre-commit autoupdate #61

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chore(pre-commit.ci): pre-commit autoupdate #61

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✅⚠️MegaLinter analysis: Success with warnings

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pre-commit-ci bot commented Aug 25, 2025 •

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