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Designing AAV sequences for retinal cell types (with scATAC-seq models)

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Uses models trained here: https://github.com/kundajelab/retina-models, available here: https://doi.org/10.5281/zenodo.6330052, associated with https://doi.org/10.1016/j.xgen.2022.100164. See https://github.com/kundajelab/retina-design/tree/main/src/20220503_design/out/v1 for an overview of how enhancers were designed to target Retinal ganglion and Horizontal cells.

Associated model interpretation and TF-MoDISco outputs can be found at https://doi.org/10.5281/zenodo.14061304.

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