Skip to content

Issues: krishnanlab/obnb

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

58 Open 143 Closed
58 Open 143 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

create hierarchical splitter
#501 opened Nov 21, 2024 by falquaddoomi
create term hold-out scenario.
#498 opened Sep 18, 2024 by kmanpearl
1
HPO creates empty label set collection
#497 opened Aug 26, 2024 by kmanpearl
OboTermIncompleteError when processing mondo in specific directory
#496 opened Jul 31, 2024 by kmanpearl
2
multiple connected components in mondo ontology
#495 opened Jul 31, 2024 by kmanpearl
Option to fall back to downloading from latest if current or the version provided is not available.
#486 opened Dec 6, 2023 by RemyLau
Archive more adata options
#485 opened Dec 6, 2023 by RemyLau
Remove obselete terms in ontologies (filtering)
#483 opened Nov 27, 2023 by RemyLau
Add option for weighted to be inferred (SparseGraph from npz, etc.)
#463 opened Aug 20, 2023 by RemyLau
Potentially issue when saving directed edge list (compact..)
#462 opened Aug 16, 2023 by RemyLau
Combine .get_y and .split; consolidate supervised and gnn trainers regarding handling of negatives
#409 opened Apr 11, 2023 by RemyLau
1
Add progress bar to restrict_to_branch
#384 opened Feb 14, 2023 by RemyLau
Make a dense mode for loading graph from CX
#345 opened Jan 13, 2023 by RemyLau
Add link to data source webpage, and to NDEx when appliacble
#344 opened Jan 12, 2023 by RemyLau
Implement DGL dataloader
#343 opened Jan 12, 2023 by RemyLau
Add networkx as a choice of graph backend
#340 opened Jan 12, 2023 by RemyLau
2 tasks
Display time left before retrying log
#312 opened Oct 2, 2022 by RemyLau
Improve data release
#292 opened Sep 9, 2022 by RemyLau
5 tasks
v0.1.0 rc
Set up mechanism to auto update test data stats for new data release
#291 opened Sep 9, 2022 by RemyLau
Log check point stats after each filtering step to file (currently only log to screen)
#290 opened Sep 9, 2022 by RemyLau
Add summary sheet for data release and upload to archive along with data in each data release
#289 opened Sep 9, 2022 by RemyLau
Ubiquitous entity filtering based on percentage of occurance enhancement New feature or request
#288 opened Sep 9, 2022 by RemyLau
Negative mask enhancement New feature or request
#287 opened Sep 9, 2022 by RemyLau
Refactor transform refactor
#285 opened Sep 6, 2022 by RemyLau
2 tasks
Validate and summarize data stats at the end of release data processing
#276 opened Sep 5, 2022 by RemyLau
ProTip! Follow long discussions with comments:>50.