pmex_regulatory_mechanisms

Analyses and data for McGowan, K.L., Duttke, S.H., Arias-Rodriguez, L., Tobler, M., Kelley, J.L. (2022) "Nascent transcription reveals regulatory changes in extremophile fishes inhabiting hydrogen sulfide-rich springs".

Additional input files required for analyses are listed below.

H₂S-related Gene and Reference Sets

Used in 01_csRNA_analyses.md.
OXPHOS_Reference_and_Detox_Gene_IDS.csv

Blast Results

Used in 01_csRNA_analyses.md.
Table S2 from Passow, C.N., Henpita, C., Shaw, J.H., Quackenbush, C.R., Warren, W.C., Schartl, M., Arias-Rodriguez, L., Kelley, J.L., Tobler, M. (2017) "The roles of plasticity and evolutionary change in shaping gene expression variation in natural populations of extremophile fish." Mol Ecol 26(22): 6384-6399.

Annotations

Used in 02_mRNA_analyses.md.
PmexGeneNameMatching.csv pulled from the Poecilia mexicana GFF file.