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docs: remove duplicate and unused files from .codex/prompts/ - #280

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chore/cleanup-duplicate-unused-files
Jan 2, 2026
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docs: remove duplicate and unused files from .codex/prompts/#280
keito4 merged 2 commits into
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chore/cleanup-duplicate-unused-files

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@keito4

@keito4 keito4 commented Jan 2, 2026

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Summary

リポジトリ内の重複ファイルと未使用ファイルを削除し、ドキュメントを更新しました。

削除されたファイル

完全重複ファイル (3ファイル)

  • .codex/prompts/git-sync.md.claude/commands/git-sync.mdと完全に同一
  • .codex/prompts/setup-husky.md.claude/commands/setup-husky.mdと完全に同一
  • .codex/prompts/README.md.claude/commands/README.mdの古いバージョン

Next.js特化ファイル (4ファイル)

このリポジトリはNext.jsプロジェクトではないため、以下を削除:

  • .codex/prompts/next-security-check.md
  • .codex/prompts/next-security:authz-review.md
  • .codex/prompts/next-security:config-audit.md
  • .codex/prompts/next-security:deps-scan.md

未使用のリファクタリングプロンプト (5ファイル)

実際に参照・使用されていないため削除:

  • .codex/prompts/refactor:decouple.md
  • .codex/prompts/refactor:dedupe.md
  • .codex/prompts/refactor:reorganize.md
  • .codex/prompts/refactor:simplify.md
  • .codex/prompts/refactor:split.md

その他 (1ファイル)

  • .codex/prompts/setup-recommended-ci.md - 既存のコマンドと重複

空ディレクトリ

  • .codex/prompts/ - すべてのファイルが削除されたため

ドキュメント更新

  • README.md: .codex/の説明をMCP設定のみに簡素化
  • .claude/commands/README.md: .codex/prompts/への参照を削除

削減効果

  • 13ファイル削除
  • 約31.9K削減
  • 重複コード534行削除 (2.78%の重複率を解消)
  • 2,056行削除

分析結果

以下のツールで分析を実施:

  • jscpd: 重複コード検出
  • dependency-health-check: 依存関係ヘルスチェック (結果: 100/100、脆弱性なし)
  • コードベース構造分析

Test plan

  • すべてのテストが通過
  • Lintが通過
  • コミットメッセージがconventional commitsに準拠
  • Quality Gatesが通過
  • .codex/config.tomlは保持されている(MCP設定として必要)

🤖 Generated with Claude Code

Summary by CodeRabbit

  • Documentation

    • Streamlined internal documentation structure by consolidating prompt and setup guides.
    • Updated directory configuration to reflect current tooling architecture.
  • Chores

    • Enhanced GitHub workflow to support automatic PR creation during issue resolution.

✏️ Tip: You can customize this high-level summary in your review settings.

keito4 and others added 2 commits January 2, 2026 15:55
Issue #277で提案されたPR自動作成機能をclaude.ymlに追加しました。

## Changes

### 1. settings パラメータ追加

`permissions.allowedTools`で必要なBashツールを許可:
- Bash(gh:*) - GitHub CLIコマンド
- Bash(npm:*) - npmコマンド
- Bash(pnpm:*) - pnpmコマンド
- Bash(npx:*) - npxコマンド

### 2. claude_args にシステムプロンプト追加

Issueから作業する際、コード変更完了後にPRを自動作成するよう指示

## Benefits

### Before
- Issueからの作業完了後、手動でPR作成URLをクリック
- PRのタイトルや本文を手動で入力
- ワークフローの中断

### After
- Issueからの作業完了後、自動的にPRが作成される
- gh pr createコマンドが自動実行される
- シームレスなワークフロー

## Behavior

Issueから@claude: コード変更完了後、自動的にPR作成
PRコメントで@claude: PR作成不要(既にPR内)

## Type of Change

- New feature (non-breaking change which adds functionality)
- CI/CD changes

## Source

This feature was discovered from keito4-org/n8n_custom_node
repository using the config-contribution-discover command.

Closes #277

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- 完全重複ファイル削除: git-sync.md, setup-husky.md, README.md (.claude/commands/に存在)
- 未使用のNext.js特化ファイル削除: next-security-*.md (このリポジトリはNext.jsプロジェクトではない)
- 未使用のリファクタリングプロンプト削除: refactor:*.md (実際に使用されていない)
- その他の未使用ファイル削除: setup-recommended-ci.md
- 空ディレクトリ削除: .codex/prompts/
- ドキュメント更新: README.mdと.claude/commands/README.mdから.codex/prompts/への参照を削除

削減効果:
- 13ファイル削除
- 約31.9K削減
- 重複コード534行削除 (2.78%の重複率を解消)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
@coderabbitai

coderabbitai Bot commented Jan 2, 2026

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📝 Walkthrough

Walkthrough

This PR consolidates documentation and workflow configuration by removing extensive .codex/prompts/ documentation files (security checks, refactoring guides, setup instructions), updating README references to reflect that .codex/ now serves as MCP server configuration, and modifying the GitHub Actions Claude workflow to add explicit tool restrictions and a system prompt for automatic PR creation.

Changes

Cohort / File(s) Summary
Codex Prompts Directory Cleanup
.codex/prompts/README.md, .codex/prompts/git-sync.md, .codex/prompts/next-security-check.md, .codex/prompts/next-security:authz-review.md, .codex/prompts/next-security:config-audit.md, .codex/prompts/next-security:deps-scan.md, .codex/prompts/refactor:decouple.md, .codex/prompts/refactor:dedupe.md, .codex/prompts/refactor:reorganize.md, .codex/prompts/refactor:simplify.md, .codex/prompts/refactor:split.md, .codex/prompts/setup-husky.md, .codex/prompts/setup-recommended-ci.md
Removed 13 markdown documentation files covering automated security checks, refactoring guidelines, and setup procedures; no functional code changes, only documentation elimination
README References
.claude/commands/README.md, README.md
Updated .claude/commands/README.md to remove sentence referencing .codex/prompts/ directory; updated main README.md to describe .codex/ as MCP server configuration (config.toml) for Claude Code integration instead of Codex CLI automation
GitHub Actions Workflow
.github/workflows/claude.yml
Replaced commented custom prompt guidance with explicit settings block restricting allowed tools to Bash patterns (gh:, npm:, pnpm:, npx) and added claude_args with system prompt instructing Claude to auto-execute gh pr create for GitHub Issues

Estimated code review effort

🎯 3 (Moderate) | ⏱️ ~25 minutes

Possibly related issues

Possibly related PRs

Suggested labels

released

Poem

🐰 A cleanup so neat, files folded away,
MCP takes the stage, prompts fade to gray,
Tools now restricted, PRs auto-made,
The warren is tidier—Claude's upgrade! ✨

Pre-merge checks

✅ Passed checks (3 passed)
Check name Status Explanation
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check ✅ Passed The title clearly and concisely summarizes the main change: removal of duplicate and unused documentation files from the .codex/prompts/ directory, which aligns with the primary purpose of this PR.
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

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Actionable comments posted: 1

🧹 Nitpick comments (1)
.github/workflows/claude.yml (1)

63-65: Test the automatic PR creation behavior in a controlled environment.

The new system prompt instructs Claude to automatically run gh pr create after completing work on Issues. While this implements the desired automation from Issue #277, the imperative phrasing and lack of explicit safeguards should be validated in practice to ensure Claude doesn't create PRs prematurely or in unintended scenarios.

Recommendations for safe rollout:

  1. Monitor initial executions - Watch the first few automatic PR creations to verify the behavior matches expectations
  2. Consider adding confirmation - For high-stakes workflows, you might want Claude to ask for confirmation before running gh pr create
  3. Document the behavior - Update .claude/CLAUDE.md or workflow documentation to inform users that PRs will be created automatically when working on Issues
  4. Fallback handling - Ensure the workflow handles cases where PR creation fails (e.g., branch already has PR, permissions issues)

Based on the commit message referencing Issue #277, this appears to be an intentional workflow automation enhancement.

📜 Review details

Configuration used: defaults

Review profile: CHILL

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 0ab48ec and b7ef2af.

📒 Files selected for processing (16)
  • .claude/commands/README.md
  • .codex/prompts/README.md
  • .codex/prompts/git-sync.md
  • .codex/prompts/next-security-check.md
  • .codex/prompts/next-security:authz-review.md
  • .codex/prompts/next-security:config-audit.md
  • .codex/prompts/next-security:deps-scan.md
  • .codex/prompts/refactor:decouple.md
  • .codex/prompts/refactor:dedupe.md
  • .codex/prompts/refactor:reorganize.md
  • .codex/prompts/refactor:simplify.md
  • .codex/prompts/refactor:split.md
  • .codex/prompts/setup-husky.md
  • .codex/prompts/setup-recommended-ci.md
  • .github/workflows/claude.yml
  • README.md
💤 Files with no reviewable changes (13)
  • .codex/prompts/refactor:dedupe.md
  • .codex/prompts/next-security-check.md
  • .codex/prompts/refactor:decouple.md
  • .codex/prompts/setup-husky.md
  • .codex/prompts/next-security:deps-scan.md
  • .codex/prompts/refactor:simplify.md
  • .codex/prompts/next-security:config-audit.md
  • .codex/prompts/refactor:split.md
  • .codex/prompts/refactor:reorganize.md
  • .codex/prompts/README.md
  • .codex/prompts/setup-recommended-ci.md
  • .codex/prompts/next-security:authz-review.md
  • .codex/prompts/git-sync.md
🧰 Additional context used
📓 Path-based instructions (1)
.github/workflows/claude.yml

📄 CodeRabbit inference engine (CLAUDE.md)

Trigger automatic AI assistance on @claude mentions in issues, PRs, and comments using .github/workflows/claude.yml

Files:

  • .github/workflows/claude.yml
🧠 Learnings (4)
📓 Common learnings
Learnt from: CR
Repo: keito4/config PR: 0
File: CLAUDE.md:0-0
Timestamp: 2025-12-01T03:45:17.253Z
Learning: Applies to .github/workflows/claude.yml : Trigger automatic AI assistance on claude mentions in issues, PRs, and comments using .github/workflows/claude.yml
Learnt from: CR
Repo: keito4/config PR: 0
File: CLAUDE.md:0-0
Timestamp: 2025-12-01T03:45:17.253Z
Learning: Applies to {.codex/**,.devcontainer/codex*,package*.json,npm/global.json} : Use Conventional Commits format with release-triggering types (feat/fix/perf/revert/docs) for commits touching .codex/**, .devcontainer/codex*, package*.json, or npm/global.json
📚 Learning: 2025-12-01T03:45:17.253Z
Learnt from: CR
Repo: keito4/config PR: 0
File: CLAUDE.md:0-0
Timestamp: 2025-12-01T03:45:17.253Z
Learning: Applies to .github/workflows/claude.yml : Trigger automatic AI assistance on claude mentions in issues, PRs, and comments using .github/workflows/claude.yml

Applied to files:

  • .claude/commands/README.md
  • .github/workflows/claude.yml
📚 Learning: 2025-12-09T08:39:14.049Z
Learnt from: CR
Repo: keito4/config PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-09T08:39:14.049Z
Learning: Follow development quality standards defined in `CLAUDE.md` when using Claude Code for development assistance

Applied to files:

  • .claude/commands/README.md
  • .github/workflows/claude.yml
  • README.md
📚 Learning: 2025-12-01T03:45:17.253Z
Learnt from: CR
Repo: keito4/config PR: 0
File: CLAUDE.md:0-0
Timestamp: 2025-12-01T03:45:17.253Z
Learning: Applies to {.codex/**,.devcontainer/codex*,package*.json,npm/global.json} : Use Conventional Commits format with release-triggering types (feat/fix/perf/revert/docs) for commits touching .codex/**, .devcontainer/codex*, package*.json, or npm/global.json

Applied to files:

  • README.md
🔇 Additional comments (2)
.claude/commands/README.md (1)

3-3: LGTM! Documentation updated to reflect cleanup.

The removal of the reference to .codex/prompts/ correctly reflects the PR's deletion of those files, making the documentation accurate and focused on the commands actually present in this directory.

README.md (1)

15-15: LGTM! Accurately reflects the streamlined .codex/ directory purpose.

The updated description correctly focuses on MCP server configuration after the cleanup of .codex/prompts/. The PR objectives confirm that .codex/config.toml is preserved, making this documentation accurate.

Comment on lines +50 to +61
# Settings for allowed tools and permissions
settings: |
{
"permissions": {
"allowedTools": [
"Bash(gh:*)",
"Bash(npm:*)",
"Bash(pnpm:*)",
"Bash(npx:*)"
]
}
}

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⚠️ Potential issue | 🔴 Critical

🧩 Analysis chain

🏁 Script executed:

#!/bin/bash

# First, verify the file exists and show the settings block
echo "=== Checking .github/workflows/claude.yml exists ==="
if [ -f ".github/workflows/claude.yml" ]; then
  echo "File found. Showing lines around 50-61:"
  sed -n '45,65p' .github/workflows/claude.yml
else
  echo "File not found"
  git ls-files | grep claude
fi

echo ""
echo "=== Checking for .claude/ directory ==="
if [ -d ".claude" ]; then
  echo ".claude directory exists. Contents:"
  find .claude -type f | head -20
else
  echo ".claude directory does not exist"
fi

echo ""
echo "=== Checking repository structure ==="
ls -la .github/workflows/ | head -20

Repository: keito4/config

Length of output: 2823


🏁 Script executed:

#!/bin/bash

# Search for references to bash/shell/curl/wget/python/ruby/docker in various files
echo "=== Searching for potential tool usage in YAML workflow files ==="
rg -n 'curl|wget|python|ruby|docker|perl|java|go|rust' .github/workflows/ -t yaml || echo "No additional tool usage found in workflows"

echo ""
echo "=== Searching for bash command patterns in workflow files ==="
rg -n 'run:.*|bash|shell' .github/workflows/ -A 2 -t yaml | head -100

echo ""
echo "=== Checking if there's any documentation about Claude tool restrictions ==="
rg -n 'allowedTools|Bash\(|permission|tool' . --type=md --type=txt | head -30

Repository: keito4/config

Length of output: 143


🏁 Script executed:

#!/bin/bash

# The second script timed out, let's do targeted searches instead
echo "=== Checking CLAUDE.md for tool requirements ==="
if [ -f ".claude/CLAUDE.md" ]; then
  wc -l .claude/CLAUDE.md
  echo "First 100 lines:"
  head -100 .claude/CLAUDE.md
fi

echo ""
echo "=== Checking a few agent files for tool references ==="
for agent in .claude/agents/issue-resolver-orchestrator.md .claude/agents/issue-resolver-code-quality.md; do
  if [ -f "$agent" ]; then
    echo "=== $agent ==="
    wc -l "$agent"
    head -50 "$agent"
  fi
done

Repository: keito4/config

Length of output: 5168


🏁 Script executed:

#!/bin/bash

# Search for tool usage in .claude/ files more carefully
echo "=== Searching for bash/command patterns in .claude/ ==="
rg -i 'bash|run:|npm|pnpm|npx|gh|curl|wget|python|ruby|docker|shell' .claude/ --max-count=50

echo ""
echo "=== Checking if system_prompt mentions any tools ==="
grep -n "system.prompt\|System.prompt\|SYSTEM" .github/workflows/claude.yml -A 5 -B 5

Repository: keito4/config

Length of output: 50371


🏁 Script executed:

#!/bin/bash

# Check what tools are actually used in .claude/ agents and commands
echo "=== Tools referenced in .claude agents that are NOT in allowlist ==="
rg -o 'jq|curl|python|grep|sed|awk|find|rg' .claude/agents/ .claude/commands/ --no-filename | sort | uniq -c | sort -rn

echo ""
echo "=== Checking .claude/settings.json for comparison ==="
grep -A 80 '"allowedTools"' .claude/settings.json | head -100

Repository: keito4/config

Length of output: 265


The allowedTools configuration is too restrictive and will break existing Claude agents.

The allowlist restricts Claude to only gh:*, npm:*, pnpm:*, and npx:*, but existing agents in .claude/agents/ and .claude/commands/ depend on tools not included:

  • jq (56 references) — Required for JSON parsing in issue resolvers and dependency agents
  • rg (115 references) — Used throughout agents for codebase searching
  • sed (78 references) — Text transformation in multiple agents
  • grep (26 references) — Pattern matching across agents
  • find (19 references) — File discovery in commands
  • curl (4 references) — Webhook notifications (documented in .claude/settings.local.json.template)

Add these tools to allowedTools to prevent agent failures:

"allowedTools": [
  "Bash(gh:*)",
  "Bash(npm:*)",
  "Bash(pnpm:*)",
  "Bash(npx:*)",
  "Bash(jq:*)",
  "Bash(rg:*)",
  "Bash(curl:*)",
  "Bash(grep:*)",
  "Bash(sed:*)",
  "Bash(find:*)"
]
🤖 Prompt for AI Agents
.github/workflows/claude.yml around lines 50 to 61: the current allowedTools
list is too restrictive and omits utilities used by existing Claude agents
(.claude/agents and .claude/commands) such as jq, rg, sed, grep, find and curl;
update the allowedTools array to include these tools (Bash(jq:*), Bash(rg:*),
Bash(curl:*), Bash(grep:*), Bash(sed:*), Bash(find:*)) alongside the existing
gh/npm/pnpm/npx entries so agents relying on those commands do not fail at
runtime.

@keito4

keito4 commented Jan 2, 2026

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(aside)
@claude PRがbaseにマージする際にCIが落ちています。
修正してください。

@claude

claude Bot commented Jan 2, 2026

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Claude encountered an error —— View job


I'll analyze this and get back to you.

@keito4
keito4 merged commit d487eaa into main Jan 2, 2026
11 of 13 checks passed
@keito4
keito4 deleted the chore/cleanup-duplicate-unused-files branch January 29, 2026 00:50
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