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  1. SeqShuffle.jl SeqShuffle.jl Public

    Shuffle the string sequences such that the k-mer frequency is preserved in each string

    Julia 8

  2. MOTIFs.jl MOTIFs.jl Public

    DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.

    Julia 7

  3. FastaLoader.jl FastaLoader.jl Public

    Load fasta files that contain DNA strings and process it for other downstream tasks

    Julia 4

  4. SimDNA.jl SimDNA.jl Public

    Generate simulated DNA sequences for regulatory genomics problems

    Julia 4

  5. MotifPvalue.jl MotifPvalue.jl Public

    Threshold and p-value computations for Position Weight Matrices

    Julia 2

  6. UnfoldCDL.jl UnfoldCDL.jl Public

    Deep Unfolded Convolutional Dictionary Learning for motif discovery.

    Julia 1 1

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April 2025

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