scSplit_paper_data

Results discovered in the paper "Genotype-free demultiplexing of pooled single-cell RNA-seq"

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1852-7

newly published tool scSplit were used to generate all data

https://github.com/jon-xu/scSplit

Results in Table 2 and Figure 1B were generated based on datasets for the paper Zheng et al, “Massively parallel digital transcriptional profiling of single cells” (previously deposited to biorxiv)

Donor A: https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/frozen_pbmc_donor_a

Donor B: https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/frozen_pbmc_donor_b

Donor C: https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/frozen_pbmc_donor_c

Datasets for table 3 and figure 1C: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108313

Datasets for table 4 and figure 2A: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE96583

Datasets used to generate results in Table 5 and Figure 2B: https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-10060