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1. ComparativeGenomicsToolkit/cactus ComparativeGenomicsToolkit/cactus Public

   Official home of genome aligner based upon notion of Cactus graphs

   C 529 111

2. analysis-purgatory analysis-purgatory Public

   Miscellaneous analyses that weren't/aren't expected to be part of a paper, but need source control anyway

   Python

3. glennhickey/progressiveCactus glennhickey/progressiveCactus Public

   Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules

   Python 83 26

4. ComparativeGenomicsToolkit/hal ComparativeGenomicsToolkit/hal Public

   Hierarchical Alignment Format

   C++ 165 39

5. vertebrate-phylogeny vertebrate-phylogeny Public

   A phylogeny of vertebrates which have genome assemblies available

   Python 2

6. DataBiosphere/toil DataBiosphere/toil Public

   A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

   Python 900 240