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minor #30

Triggered via push December 22, 2024 04:46
Status Success
Total duration 2m 52s
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Documenter.yml

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5 warnings
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
failed to run `@example` block in src/generated/CalibOneSite.md:18-22 ```@example CalibOneSite theta, goal, flag = ModelCalib(df, par0) df_out = PMLV2_sites(df; par=theta2par(theta)) df_out[1:10, :] ``` exception = MethodError: no method matching ModelCalib(::DataFrame, ::Param_PMLV2{Float64}) The function `ModelCalib` exists, but no method is defined for this combination of argument types. Closest candidates are: ModelCalib(::DataFrames.AbstractDataFrame, ::PML.AbstractETParam, !Matched::Any; IGBPcode, maxn, of_gof, kw...) @ PML ~/work/PML.jl/PML.jl/src/ModelCalib.jl:43 Stacktrace: [1] top-level scope @ CalibOneSite.md:19 [2] eval @ ./boot.jl:430 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
failed to run `@example` block in src/generated/CalibOneSite.md:26-31 ```@example CalibOneSite gof = [ (; var="ET", GOF(df.ET_obs, df_out.ET)...), (; var="GPP", GOF(df.GPP_obs, df_out.GPP)...)] |> DataFrame DataFrame(gof) ``` exception = ArgumentError: column name "ET" not found in the data frame; existing most similar names are: "Ec", "Ei", "Es", "Eca", "Ecr", "Ga" and "Gc" Stacktrace: [1] lookupname @ ~/.julia/packages/DataFrames/kcA9R/src/other/index.jl:434 [inlined] [2] getindex @ ~/.julia/packages/DataFrames/kcA9R/src/other/index.jl:440 [inlined] [3] getindex(df::DataFrame, ::typeof(!), col_ind::Symbol) @ DataFrames ~/.julia/packages/DataFrames/kcA9R/src/dataframe/dataframe.jl:557 [4] getproperty(df::DataFrame, col_ind::Symbol) @ DataFrames ~/.julia/packages/DataFrames/kcA9R/src/abstractdataframe/abstractdataframe.jl:448 [5] top-level scope @ CalibOneSite.md:27 [6] eval @ ./boot.jl:430 [inlined] [7] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [8] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [9] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [10] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [11] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [12] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [13] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [14] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
failed to run `@example` block in src/generated/CalibOneSite.md:35-70 ```@example CalibOneSite using Plots gr(framestyle=:box, titlefontsize=12) t = df.date inds = 1:46*1 function plot_var(var; label=string(var), title=string(var), data=df_out, scale=1, kw...) plot(t[inds], data[inds, var] * scale; label, title, kw...) end function plot_var!(p, var; label=string(var), data=df_out, kw...) plot!(p, t[inds], data[inds, var]; label, kw...) end p_et = plot(title="ET components (mm/d)") plot_var!(p_et, :Ec) plot_var!(p_et, :Es) plot_var!(p_et, :Ei) plot_var!(p_et, :ETobs; data=df, label="ET_obs", color=:black) p_gpp = plot_var(:GPP; title="GPP (gC m-2 d-1)", label="GPP") plot_var!(p_gpp, :GPPobs; data=df, label="GPP_obs", color=:black) plot( p_et, p_gpp, plot_var(:Eeq; title="Eeq (mm/d)", label="Eeq"), plot_var(:Gc_w; title="Conductance (m s-1)", label="Gc"), plot_var(:fval_soil; title="β_soil", label="β_soil"), plot_var(:VPD; data=df, scale=-1, title="-VPD (kPa)", label="-VPD"), plot_var(:Pi; title="P - Ei (mm/d)"), plot_var(:Es_eq; title="Es_eq (mm/d)"), size=(800, 700), layout=(4, 2), ) ``` exception = ArgumentError: column name "GPP" not found in the data frame; existing most similar names are: "Ga" and "Gc" Stacktrace: [1] lookupname @ ~/.julia/packages/DataFrames/kcA9R/src/other/index.jl:434 [inlined] [2] getindex @ ~/.julia/packages/DataFrames/kcA9R/src/other/index.jl:440 [inlined] [3] getindex(df::DataFrame, row_inds::UnitRange{Int64}, col_ind::Symbol) @ DataFrames ~/.julia/packages/DataFrames/kcA9R/src/dataframe/dataframe.jl:531 [4] plot_var(var::Symbol; label::String, title::String, data::DataFrame, scale::Int64, kw::@kwargs{}) @ Main.__atexample__named__CalibOneSite ./CalibOneSite.md:43 [5] top-level scope @ CalibOneSite.md:56 [6] eval @ ./boot.jl:430 [inlined] [7] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [8] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [9] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [10] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [11] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [12] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [13] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [14] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/deploydocs.jl#L533
removing `v2` and linking `v2` to `v0.1.0`.
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/deploydocs.jl#L533
removing `v0.1` and linking `v0.1` to `v0.1.0`.