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1. Colvars/colvars Colvars/colvars Public

   Collective variables library for molecular simulation and analysis programs

   C++ 219 58

2. qwrap qwrap Public

   Fast PBC wrapping and unwrapping for VMD

   C++ 23 3

3. vecexpr vecexpr Public

   Vector-based pocket calculator for Tcl, implemented in C++

   C++ 1 1

4. Methods-for-enhanced-sampling-and-free-energy-calculations Methods-for-enhanced-sampling-and-free-energy-calculations Public

   Enhanced sampling methods for molecular dynamics simulations

   TeX 36 3

5. SAFEP_tutorial SAFEP_tutorial Public

   A tutorial for Streamlined Alchemical Free Energy Perturbations with NAMD

   TeX 12 3

6. NAMD_regtests NAMD_regtests Public

   A set of regression tests for NAMD

   Shell