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🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

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WholeSlideImageSampler

Tools for sampling patches from Whole-Slide-Images (WSIs) readable by openslide using Python ('tested' on 3.5).

Install

pip install wsisampler

You will need to install openslide. This is included in the dependencies so may be automatically installed. If not I found this to help:

#!/bin/bash

sudo apt-get install openslide-tools
pip install openslide-python

Example usage

Please see demo.ipynb here.

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🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

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