Remove unused code

[speleo3]

Attention: This is rigorous cleanup! I removed code which appears to be broken, unused or unreachable within the code base. I cannot rule out that anything of that is used from external code, although I believe that it's very unlikely.

• Remove all code which was previously marked with NotImplementedError("unused")
• Remove unsued command line arguments
• Remove unused arguments, replace mutable defaults
  • Closes Remove unused arguments from functions #53
  • Closes Remove array-valued default arguments from methods #56

[codecov]

Codecov Report

Attention: 3 lines in your changes are missing coverage. Please review.

Comparison is base (6ee0df8) 74.84% compared to head (25ed65e) 77.45%.

Files	Patch %	Lines
propka/lib.py	75.00%	1 Missing ⚠️
propka/parameters.py	96.66%	1 Missing ⚠️
propka/version.py	83.33%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #187      +/-   ##
==========================================
+ Coverage   74.84%   77.45%   +2.61%     
==========================================
  Files          25       25              
  Lines        4118     3952     -166     
==========================================
- Hits         3082     3061      -21     
+ Misses       1036      891     -145     

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[orbeckst]

Sorry, I don't have the bandwidth for a real review. I only had a very quick look at the changes and the coverage changes. The fact that code was removed that was not covered by tests is good. Overall I like the streamlining. Thanks for doing all the work!

[speleo3]

Sorry, I don't have the bandwidth for a real review. I only had a very quick look at the changes and the coverage changes. The fact that code was removed that was not covered by tests is good. Overall I like the streamlining. Thanks for doing all the work!

Thanks for having a look and thanks for your support!

[sobolevnrm]

Thanks for doing this!