Cu 86bygn3jn images placement for client registry mapper kafka fhir #288
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…ta-file-for-message-bus-kafka' into CU-86bygn3jn_Images-Placement-for-Client-Registry-Mapper-Kafka-FHIR
…ta-file-for-message-bus-helper-hapi-proxy' into CU-86bygn3jn_Images-Placement-for-Client-Registry-Mapper-Kafka-FHIR
…ta-file-for-kafka-unbundler-consumer' into CU-86bygn3jn_Images-Placement-for-Client-Registry-Mapper-Kafka-FHIR
…ta-file-for-kafka-mapper-consumer' into CU-86bygn3jn_Images-Placement-for-Client-Registry-Mapper-Kafka-FHIR
…ta-file-for-fhir-datastore-hapi-fhir' into CU-86bygn3jn_Images-Placement-for-Client-Registry-Mapper-Kafka-FHIR
…ta-file-for-mpi-mediator' into CU-86bygn3jn_Images-Placement-for-Client-Registry-Mapper-Kafka-FHIR
…ta-file-for-data-mapper-logstash' into CU-86bygn3jn_Images-Placement-for-Client-Registry-Mapper-Kafka-FHIR
…ta-file-for-client-registry-jempi' into CU-86bygn3jn_Images-Placement-for-Client-Registry-Mapper-Kafka-FHIR
…ta-file-for-client-registry-santempi' into CU-86bygn3jn_Images-Placement-for-Client-Registry-Mapper-Kafka-FHIR
WalkthroughThe changes introduce significant updates to the configuration and deployment of PostgreSQL databases across multiple services. Key modifications include the use of environment variables for image versions and credentials, the addition of new services for PostgreSQL setup, and the creation of new scripts for database initialization. These changes enhance flexibility, improve maintainability, and streamline the setup process for PostgreSQL in various components. Changes
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…istry-Mapper-Kafka-FHIR
…istry-Mapper-Kafka-FHIR
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Actionable comments posted: 1
Review Details
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Files selected for processing (24)
- client-registry-jempi/docker-compose.combined-cluster.yml (3 hunks)
- client-registry-jempi/docker-compose.combined.yml (7 hunks)
- client-registry-jempi/docker-compose.dgraph-zero-cluster.yml (2 hunks)
- client-registry-jempi/docker-compose.dgraph-zero.yml (1 hunks)
- client-registry-jempi/docker-compose.dgraph.yml (4 hunks)
- client-registry-jempi/package-metadata.json (1 hunks)
- client-registry-santempi/docker-compose.yml (2 hunks)
- client-registry-santempi/package-metadata.json (1 hunks)
- data-mapper-logstash/docker-compose.yml (2 hunks)
- data-mapper-logstash/package-metadata.json (1 hunks)
- database-postgres/docker-compose-postgres.cluster.yml (2 hunks)
- database-postgres/docker-compose-postgres.yml (1 hunks)
- kafka-mapper-consumer/docker-compose.yml (1 hunks)
- kafka-unbundler-consumer/docker-compose.yml (1 hunks)
- kafka-unbundler-consumer/package-metadata.json (1 hunks)
- message-bus-helper-hapi-proxy/docker-compose.yml (1 hunks)
- message-bus-helper-hapi-proxy/package-metadata.json (1 hunks)
- message-bus-kafka/docker-compose.cluster.kafka.yml (3 hunks)
- message-bus-kafka/docker-compose.kafka-utils.yml (2 hunks)
- message-bus-kafka/docker-compose.kafka.yml (2 hunks)
- message-bus-kafka/package-metadata.json (1 hunks)
- mpi-mediator/docker-compose.yml (2 hunks)
- mpi-mediator/importer/docker-compose.config.yml (2 hunks)
- mpi-mediator/package-metadata.json (1 hunks)
Files skipped from review due to trivial changes (17)
- client-registry-jempi/docker-compose.combined-cluster.yml
- client-registry-jempi/docker-compose.combined.yml
- client-registry-jempi/docker-compose.dgraph-zero.yml
- client-registry-jempi/docker-compose.dgraph.yml
- client-registry-santempi/docker-compose.yml
- data-mapper-logstash/docker-compose.yml
- database-postgres/docker-compose-postgres.cluster.yml
- database-postgres/docker-compose-postgres.yml
- kafka-mapper-consumer/docker-compose.yml
- kafka-unbundler-consumer/docker-compose.yml
- kafka-unbundler-consumer/package-metadata.json
- message-bus-helper-hapi-proxy/docker-compose.yml
- message-bus-helper-hapi-proxy/package-metadata.json
- message-bus-kafka/docker-compose.kafka.yml
- mpi-mediator/docker-compose.yml
- mpi-mediator/importer/docker-compose.config.yml
- mpi-mediator/package-metadata.json
Additional comments not posted (9)
data-mapper-logstash/package-metadata.json (2)
9-9: The update to use an environment variable for the Logstash image aligns with the PR's goal for dynamic configuration.
11-11: Setting a maximum number of replicas per node is a good practice for resource management.client-registry-santempi/package-metadata.json (1)
10-20: The introduction of environment variables for PostgreSQL credentials and image versions supports dynamic configuration and aligns with the PR's objectives.message-bus-kafka/docker-compose.kafka-utils.yml (2)
5-12: The dynamic configuration for the Kafdrop service, including image and JVM options, enhances flexibility and aligns with the PR's objectives.
23-23: The dynamic configuration for the Kafka Minion service, including image and resource limits, enhances flexibility and aligns with the PR's objectives.message-bus-kafka/package-metadata.json (1)
9-15: The introduction of environment variables for Kafka and Kafdrop settings supports dynamic configuration and aligns with the PR's objectives.client-registry-jempi/docker-compose.dgraph-zero-cluster.yml (1)
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8-41: The dynamic configuration for the Dgraph Zero services, including image references and placement constraints, enhances flexibility and aligns with the PR's objectives.message-bus-kafka/docker-compose.cluster.kafka.yml (1)
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10-70: The dynamic configuration for the Kafka services, including image references, placement constraints, and resource limits, enhances flexibility and aligns with the PR's objectives.client-registry-jempi/package-metadata.json (1)
19-21: Validate the placement constraints are correctly implemented in the Docker Compose configurations.
…Placement-for-Client-Registry-Mapper-Kafka-FHIR
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Actionable comments posted: 12
Review Details
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Files selected for processing (18)
- .env.cluster (3 hunks)
- client-registry-jempi/docker-compose.api.yml (5 hunks)
- client-registry-jempi/docker-compose.combined-cluster.yml (1 hunks)
- client-registry-jempi/docker-compose.combined-dev.yml (2 hunks)
- client-registry-jempi/docker-compose.combined.yml (7 hunks)
- client-registry-jempi/importer/postgres/create-db.js (1 hunks)
- client-registry-jempi/importer/postgres/docker-compose.config.yml (1 hunks)
- client-registry-jempi/importer/postgres/package.json (1 hunks)
- client-registry-jempi/package-metadata.json (2 hunks)
- client-registry-jempi/swarm.sh (1 hunks)
- dashboard-visualiser-superset/docker-compose.yml (2 hunks)
- dashboard-visualiser-superset/importer/postgres/create-db.js (1 hunks)
- dashboard-visualiser-superset/importer/postgres/docker-compose.config.yml (1 hunks)
- dashboard-visualiser-superset/importer/postgres/package.json (1 hunks)
- dashboard-visualiser-superset/package-metadata.json (2 hunks)
- dashboard-visualiser-superset/swarm.sh (2 hunks)
- test/cucumber/features/cluster-mode/jempi.cluster.feature (2 hunks)
- test/cucumber/features/single-mode/jempi.feature (2 hunks)
Files skipped from review due to trivial changes (6)
- client-registry-jempi/docker-compose.combined-dev.yml
- client-registry-jempi/importer/postgres/package.json
- dashboard-visualiser-superset/importer/postgres/docker-compose.config.yml
- dashboard-visualiser-superset/importer/postgres/package.json
- test/cucumber/features/cluster-mode/jempi.cluster.feature
- test/cucumber/features/single-mode/jempi.feature
Files skipped from review as they are similar to previous changes (2)
- client-registry-jempi/docker-compose.combined.yml
- client-registry-jempi/package-metadata.json
Additional comments not posted (11)
client-registry-jempi/docker-compose.combined-cluster.yml (1)
1-1: The version format has been updated to use double quotes, which is consistent with YAML best practices for string representation.client-registry-jempi/importer/postgres/docker-compose.config.yml (2)
1-1: The version format has been updated to use single quotes, which is consistent with YAML best practices for string representation.
5-6: The use ofnode:erbium-alpineis a good choice for a lightweight container. However, ensure that all necessary Node.js dependencies are compatible with this version.Verification successful
The
package.jsonfile for thepostgres-configproject specifies only one dependency:pgversion^8.11.3. This version of thepglibrary is compatible with Node.js Erbium (v12).
- The
package.jsondoes not specify any engine requirements.- There are no
devDependencieslisted.Based on this information, the use of
node:erbium-alpineshould be compatible with the specified dependencies.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify Node.js compatibility with `node:erbium-alpine`. # Test: Check package.json for engine specifications. cat client-registry-jempi/importer/postgres/package.json | grep "engines"Length of output: 73
Script:
#!/bin/bash # Description: Inspect package.json for dependencies and their compatibility with Node.js Erbium. # Display the entire package.json content for manual inspection. cat client-registry-jempi/importer/postgres/package.json # List all dependencies and their versions. jq '.dependencies' client-registry-jempi/importer/postgres/package.json # List all devDependencies and their versions. jq '.devDependencies' client-registry-jempi/importer/postgres/package.jsonLength of output: 418
dashboard-visualiser-superset/importer/postgres/create-db.js (1)
1-1: The inclusion of thepgmodule is essential for PostgreSQL operations. Ensure that the version used is compatible with the rest of the application.Verification successful
The
pgmodule version used in the project is^8.11.3, as found in multiplepackage.jsonfiles, includingdashboard-visualiser-superset/importer/postgres/package.json. This version should be compatible with the rest of the application, assuming no specific version conflicts are present.
dashboard-visualiser-superset/importer/postgres/package.json:"pg": "^8.11.3"Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify PostgreSQL module version compatibility. # Test: Check package.json for `pg` module version. cat dashboard-visualiser-superset/package-metadata.json | grep "pg"Length of output: 67
Script:
#!/bin/bash # Description: Verify PostgreSQL module version compatibility. # Test: Check package.json and package-lock.json for `pg` module version. grep -H "pg" dashboard-visualiser-superset/package.json dashboard-visualiser-superset/package-lock.jsonLength of output: 260
Script:
#!/bin/bash # Description: Locate package.json and package-lock.json files and verify PostgreSQL module version compatibility. # Find package.json and package-lock.json files in the repository fd -e json -g "package*.json" # Check for `pg` module version in the located package.json and package-lock.json files fd -e json -g "package*.json" --exec grep -H "pg"Length of output: 1847
dashboard-visualiser-superset/swarm.sh (1)
48-49: The script correctly handles the deployment of PostgreSQL configurations. Ensure that the referenced Docker Compose files and paths are correct and accessible.Verification successful
The referenced Docker Compose files and paths are correct and accessible.
dashboard-visualiser-superset/importer/postgres/docker-compose.config.ymldashboard-visualiser-superset/docker-compose.ymlScripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify Docker Compose file paths. # Test: Check file existence. ls dashboard-visualiser-superset/importer/postgres/docker-compose.config.yml ls dashboard-visualiser-superset/docker-compose.ymlLength of output: 255
client-registry-jempi/docker-compose.api.yml (2)
97-99: Confirm that thepostgresnetwork is defined as external and correctly configured to ensure it can be used by the services in this Docker Compose file.
37-37: The addition of thepostgresnetwork to thejempi-apiservice should be accompanied by a corresponding network definition in the Docker Compose file to ensure proper connectivity.Verification successful
The
postgresnetwork is indeed defined in the Docker Compose file, and it is marked as an external network. This ensures proper connectivity for thejempi-apiservice.
- The
postgresnetwork is listed under thenetworkssection.- It is also referenced correctly in the
jempi-apiservice configuration.- The network is defined as external, which means it should be created outside of this Docker Compose file.
Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the definition of the `postgres` network in the Docker Compose file. # Test: Search for the network definition. Expect: Definition for `postgres` network. rg --type yaml 'postgres:' client-registry-jempi/docker-compose.api.ymlLength of output: 115
Script:
#!/bin/bash # Description: Extract and display the relevant sections of the Docker Compose file to verify the `postgres` network definitions. # Extract lines around each occurrence of `postgres:` to understand the context. rg --type yaml -A 5 -B 5 'postgres:' client-registry-jempi/docker-compose.api.ymlLength of output: 604
.env.cluster (1)
106-106: Ensure that theJEMPI_POSTGRES_DBvariable is correctly configured to point to the PostgreSQL instances intended for the JeMPI service.client-registry-jempi/importer/postgres/create-db.js (2)
20-88: Ensure that the SQL queries for table creation are syntactically correct and optimized for performance. Also, verify that the foreign key constraints are properly set up to maintain data integrity.
97-135: Confirm that the database and user creation processes handle errors appropriately and that the script logs sufficient information for debugging purposes. Also, ensure that the script releases database connections properly to avoid resource leaks.client-registry-jempi/swarm.sh (1)
68-70: Ensure that the new PostgreSQL database configuration step in the deployment script is correctly integrated with the rest of the deployment processes and that it correctly handles potential errors.
client-registry-jempi/importer/postgres/docker-compose.config.yml
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Files selected for processing (1)
- client-registry-jempi/package-metadata.json (1 hunks)
Files skipped from review as they are similar to previous changes (1)
- client-registry-jempi/package-metadata.json
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Actionable comments posted: 0
Outside diff range and nitpick comments (1)
database-postgres/package-metadata.json (1)
38-38: Specify the unit forPOSTGRES_DEGRADED_MONITORING_TIMEOUT.It's important to clarify whether the timeout is in seconds, minutes, or another unit to avoid configuration errors.
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Files selected for processing (1)
- database-postgres/package-metadata.json (1 hunks)
Additional comments not posted (1)
database-postgres/package-metadata.json (1)
39-39: Verify the appropriateness ofPOSTGRES_REPLICAS.Ensure that setting the number of replicas to "1" aligns with the system's scalability and fault tolerance requirements. Consider increasing the number of replicas if higher availability is needed.
…istry-Mapper-Kafka-FHIR
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Summary by CodeRabbit
New Features
Bug Fixes
Chores
package-metadata.jsonfiles to include specific image versions and node placements.